Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_A08
         (936 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...    29   0.71 
SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces pomb...    26   8.8  

>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score = 29.5 bits (63), Expect = 0.71
 Identities = 21/69 (30%), Positives = 31/69 (44%)
 Frame = +2

Query: 272 LSGXEARKWGPPFMKDCGDSYYFQSVNRNKKSXCIDFKSQEGKKIIYDLAKKCDVLVENF 451
           +S   AR +   F    G SY F ++NR ++S  + F   +  KI  DLA   D   +  
Sbjct: 399 MSVSAARTFDLTFTLRSGTSYQFSNINRVEQSALVAFLESKQIKIHNDLA---DETQQTL 455

Query: 452 IPGKLDQMD 478
           +   LD  D
Sbjct: 456 LTSALDDED 464


>SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 597 IAAAITSYPGFFVYGPLGPKPVIAQYIS 514
           + A I S+   FV+G  G KP I QY S
Sbjct: 326 VLAEIPSWLKGFVHGVSGTKPFIYQYFS 353


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,663,753
Number of Sequences: 5004
Number of extensions: 50019
Number of successful extensions: 111
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)