Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_A08
(936 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48638-7|CAA88571.2| 340|Caenorhabditis elegans Hypothetical pr... 71 9e-13
U40424-2|AAA81458.3| 343|Caenorhabditis elegans Hypothetical pr... 67 2e-11
AC006749-2|AAF60533.3| 731|Caenorhabditis elegans Hypothetical ... 32 0.68
Z81119-1|CAB03331.1| 363|Caenorhabditis elegans Hypothetical pr... 29 6.3
U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical p... 28 8.3
U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical p... 28 8.3
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t... 28 8.3
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t... 28 8.3
AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel... 28 8.3
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel... 28 8.3
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel... 28 8.3
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel... 28 8.3
>Z48638-7|CAA88571.2| 340|Caenorhabditis elegans Hypothetical
protein ZK892.4 protein.
Length = 340
Score = 71.3 bits (167), Expect = 9e-13
Identities = 43/133 (32%), Positives = 69/133 (51%), Gaps = 2/133 (1%)
Frame = +2
Query: 341 QSVNRNKKSXCIDFKSQEGKKIIYDLAKKCDVLVENFIPGKLDQMDVXYEKLKTVNPKLI 520
Q +NR K +D K+ E K + DL + DVL++ + PG L++M + L N LI
Sbjct: 45 QRLNRGKTMKQLDLKNPEDIKKVRDLCQTSDVLLDPYRPGTLEKMGLDPSTLWNNNKGLI 104
Query: 521 YCAITGFGPRGPYTKKPGYDVIAAAMGGLLHT-TGERNGNPVKTGVAITDIT-TGLHAFG 694
C I+G+G G +++ G+D+ A+ G+L T +G P + D GL A
Sbjct: 105 ICKISGYGQTGRMSQETGHDINYVALSGMLPTFSGVNATRPWPPANMLADFAGGGLSAAF 164
Query: 695 AIMAALYHRNSTG 733
I++A+Y R+ G
Sbjct: 165 GILSAIYARSHNG 177
>U40424-2|AAA81458.3| 343|Caenorhabditis elegans Hypothetical
protein C24A3.4 protein.
Length = 343
Score = 66.9 bits (156), Expect = 2e-11
Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 2/133 (1%)
Frame = +2
Query: 341 QSVNRNKKSXCIDFKSQEGKKIIYDLAKKCDVLVENFIPGKLDQMDVXYEKLKTVNPKLI 520
Q +NR K D + E K + DL + DVL++ + PG L++M + L N LI
Sbjct: 45 QRMNRGKSMKEFDLRKSEDIKKVRDLCRTSDVLLDPYRPGTLEKMGLDPLSLWNDNKGLI 104
Query: 521 YCAITGFGPRGPYTKKPGYDVIAAAMGGLLHT-TGERNGNPVKTGVAITDIT-TGLHAFG 694
C I+G+G G +++ G+D+ AM G+L T G P + D GL A
Sbjct: 105 ICRISGYGQTGRMSQEAGHDINYVAMSGMLPTFAGAEASRPWPPVNMLADFAGGGLSAAF 164
Query: 695 AIMAALYHRNSTG 733
I++A++ R G
Sbjct: 165 GIVSAIHARTHNG 177
>AC006749-2|AAF60533.3| 731|Caenorhabditis elegans Hypothetical
protein Y39D8B.3 protein.
Length = 731
Score = 31.9 bits (69), Expect = 0.68
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Frame = -1
Query: 702 MIAPKACRPVVMSVIATPVFTGFP-LRSPVVCNSPPIAAAITSYP--GFFVYGPLGPKPV 532
+++P A P+++S A F G P L +P++ + ++ I S P FV P P
Sbjct: 652 ILSPVALTPIILSPFALSPFIGVPNLMTPIILSPFVLSPLILSPPFVSAFVLTPYALSPT 711
Query: 531 IAQYISLGLTVLSFSYXTSI 472
+ ++ VLS S+ +++
Sbjct: 712 VLSSGAVFTAVLSPSWLSTL 731
>Z81119-1|CAB03331.1| 363|Caenorhabditis elegans Hypothetical
protein T10H4.2 protein.
Length = 363
Score = 28.7 bits (61), Expect = 6.3
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -1
Query: 477 SIWSSFPGMKFSTSTSHFFARSYIIFFPSCDLKSIXMLFLFLFT 346
+IW SF M S + HFF R + P +K ++F +T
Sbjct: 96 TIWCSFYAMMLSLLSIHFFYRYTSVTAPILLMKRFSCRYIFKYT 139
>U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical
protein F52C9.1a protein.
Length = 1336
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 317 DCGDSYYFQSVNRNKKSXCIDFKSQEGKKIIYDLAKKCDVL 439
DC + +F SV N + ++F + GK + + +K DV+
Sbjct: 622 DCDEFSFFVSVRLNIPTKILNFSEEFGKCVSLHILRKLDVI 662
>U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical
protein F52C9.1b protein.
Length = 1331
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 317 DCGDSYYFQSVNRNKKSXCIDFKSQEGKKIIYDLAKKCDVL 439
DC + +F SV N + ++F + GK + + +K DV+
Sbjct: 622 DCDEFSFFVSVRLNIPTKILNFSEEFGKCVSLHILRKLDVI 662
>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1797
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 535 CDSTVYKLRVDSFKLFISYIHLVQF 461
CDS+ R F +FIS IHL+ F
Sbjct: 110 CDSSYLSNRWSQFSVFISIIHLLSF 134
>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1831
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 535 CDSTVYKLRVDSFKLFISYIHLVQF 461
CDS+ R F +FIS IHL+ F
Sbjct: 110 CDSSYLSNRWSQFSVFISIIHLLSF 134
>AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
b protein.
Length = 978
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 535 CDSTVYKLRVDSFKLFISYIHLVQF 461
CDS+ R F +FIS IHL+ F
Sbjct: 168 CDSSYLSNRWSQFSVFISIIHLLSF 192
>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
a protein.
Length = 1562
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 535 CDSTVYKLRVDSFKLFISYIHLVQF 461
CDS+ R F +FIS IHL+ F
Sbjct: 168 CDSSYLSNRWSQFSVFISIIHLLSF 192
>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
c protein.
Length = 1913
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 535 CDSTVYKLRVDSFKLFISYIHLVQF 461
CDS+ R F +FIS IHL+ F
Sbjct: 168 CDSSYLSNRWSQFSVFISIIHLLSF 192
>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
d protein.
Length = 1861
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 535 CDSTVYKLRVDSFKLFISYIHLVQF 461
CDS+ R F +FIS IHL+ F
Sbjct: 140 CDSSYLSNRWSQFSVFISIIHLLSF 164
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,875,180
Number of Sequences: 27780
Number of extensions: 290491
Number of successful extensions: 681
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2412704140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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