Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_A08
         (936 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   1.7  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   5.3  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   9.2  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   9.2  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 477 SIWSSFPGMKFSTSTSHFFARSYI 406
           ++WS  P M +  ST+H  A+ ++
Sbjct: 99  ALWSLVPHMAWQLSTAHLLAQLFL 122


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 697 CSESMQASCNVSNCYTC 647
           C+E MQ SCN   C  C
Sbjct: 79  CAEGMQCSCN--KCIGC 93


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 611 HTTGERNGNPVKTGVAI 661
           HT  E + NP+KT +++
Sbjct: 71  HTIIEMDSNPIKTALSV 87


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = -3

Query: 628 AFTCSV*QSTHSCCYYIISRFFCIWSSRSKTCDST 524
           AF C   Q   S  YY       + SSR  +C+ T
Sbjct: 420 AFRCKPSQRFASGRYYSAYSLHHVRSSRESSCEQT 454


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,890
Number of Sequences: 438
Number of extensions: 3560
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30597567
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)