Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_A07
(955 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0083 + 631196-631675 32 0.59
08_02_1410 - 26876243-26876497,26877129-26877239,26877240-268773... 30 3.1
07_03_1136 + 24218601-24218734,24218769-24219906 29 4.1
01_06_1790 - 39888313-39888350,39888437-39888530,39888612-398888... 29 4.1
01_03_0005 + 11568545-11569119,11569179-11569191 29 4.1
03_05_0688 + 26762668-26762893,26763027-26763101,26763865-267640... 29 7.2
07_03_0922 - 22612773-22613321,22613616-22614189,22614389-226144... 28 9.5
07_03_0329 + 16840051-16840917,16840999-16841342,16841444-168415... 28 9.5
02_05_0818 + 32004749-32005347,32005905-32006415,32006539-32007300 28 9.5
02_05_0686 - 30900748-30902167,30903442-30904742 28 9.5
>01_01_0083 + 631196-631675
Length = 159
Score = 32.3 bits (70), Expect = 0.59
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +1
Query: 403 GGGGKFXEXXXPPPRGXXGGGGXGLPXP 486
GGGG + PP G GGGG P P
Sbjct: 82 GGGGGYIPYYQPPAGGGGGGGGFNYPAP 109
>08_02_1410 -
26876243-26876497,26877129-26877239,26877240-26877324,
26877620-26877672,26878318-26878440,26878514-26878597,
26878708-26878773,26879512-26879584,26879854-26879888,
26879970-26880212
Length = 375
Score = 29.9 bits (64), Expect = 3.1
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = +1
Query: 403 GGGGKFXEXXXPPPRGXXGGGGXG 474
GGGG E P P G GGGG G
Sbjct: 17 GGGGGGGEGLNPNPSGGGGGGGGG 40
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 29.5 bits (63), Expect = 4.1
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +1
Query: 388 KGXGXGGGGKFXEXXXPPPRGXXGGGGXG 474
KG G GGGG G GGGG G
Sbjct: 276 KGGGGGGGGALENAREDGAEGGGGGGGGG 304
Score = 28.3 bits (60), Expect = 9.5
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +1
Query: 388 KGXGXGGGGKFXEXXXPPPRGXXGGGGXG 474
+G G GGGG P G GGGG G
Sbjct: 295 EGGGGGGGGGGGGGHGAPELGFSGGGGGG 323
>01_06_1790 -
39888313-39888350,39888437-39888530,39888612-39888836,
39888944-39889018,39889144-39889212,39889319-39889384,
39889492-39889713,39889794-39890681,39890973-39891053,
39892546-39892598,39893010-39893088,39893218-39893319
Length = 663
Score = 29.5 bits (63), Expect = 4.1
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +1
Query: 412 GKFXEXXXPPPRGXXGGGGXGLP 480
G+F PP G GGGG GLP
Sbjct: 263 GQFHHYAAPPQVGGGGGGGGGLP 285
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 29.5 bits (63), Expect = 4.1
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +1
Query: 391 GXGXGGGGKFXEXXXPPPRGXXGGGGXG 474
G GGGG + PPP G GGGG G
Sbjct: 103 GSSTGGGGIYY----PPPTGGGGGGGGG 126
Score = 29.1 bits (62), Expect = 5.5
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +1
Query: 391 GXGXGGGGKFXEXXXPPPRGXXGGGG 468
G G GGGG PPP GGGG
Sbjct: 78 GGGGGGGGGTVMYTSPPPPYSGGGGG 103
>03_05_0688 +
26762668-26762893,26763027-26763101,26763865-26764032,
26764983-26765114,26765538-26765677,26765840-26765908,
26766325-26766435,26766854-26766973,26768223-26768324,
26769608-26769778,26769865-26769944,26770119-26770182
Length = 485
Score = 28.7 bits (61), Expect = 7.2
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +1
Query: 391 GXGXGGGGKFXEXXXPPPRGXXGGGGXGL 477
G G GGGG P G GGGG G+
Sbjct: 15 GGGGGGGGGGGGGGVDPAGGGSGGGGPGM 43
>07_03_0922 -
22612773-22613321,22613616-22614189,22614389-22614466,
22615455-22615504,22616215-22616448
Length = 494
Score = 28.3 bits (60), Expect = 9.5
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +1
Query: 391 GXGXGGGGKFXEXXXPPPRGXXGGGG 468
G G GGGG E RG GGGG
Sbjct: 10 GGGGGGGGVKKEEGEEEARGRGGGGG 35
>07_03_0329 +
16840051-16840917,16840999-16841342,16841444-16841574,
16841671-16841792,16841877-16841983,16842104-16842236,
16842342-16842458,16842560-16842667,16842716-16842742,
16842759-16842830,16843462-16843584,16843671-16843833,
16844140-16844264,16844355-16844489,16844574-16844677,
16844772-16844834,16844930-16844993,16845186-16845318,
16845414-16845487,16845603-16845697,16845799-16845830,
16846201-16846355
Length = 1097
Score = 28.3 bits (60), Expect = 9.5
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +1
Query: 391 GXGXGGGGKFXEXXXPPPRGXXGGGGXG 474
G G GGGG + RG GGGG G
Sbjct: 118 GYGRGGGGYHGDGERGYGRGGGGGGGGG 145
>02_05_0818 + 32004749-32005347,32005905-32006415,32006539-32007300
Length = 623
Score = 28.3 bits (60), Expect = 9.5
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +1
Query: 391 GXGXGGGGKFXEXXXPPPRGXXGGGGXG 474
G G GGGG + P RG GGGG G
Sbjct: 14 GDGDGGGGG-GDRWMPDLRGGNGGGGGG 40
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 28.3 bits (60), Expect = 9.5
Identities = 15/47 (31%), Positives = 15/47 (31%)
Frame = +2
Query: 677 PXPPXEKKKNXXXPXXGGXXXXXXPPPKXXX*XKPPXPXXGRFPXPP 817
P PP K P G PPP PP P G PP
Sbjct: 344 PPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGGASRPP 390
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.150 0.495
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,689,899
Number of Sequences: 37544
Number of extensions: 288193
Number of successful extensions: 882
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2752963900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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