Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_A06
         (876 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679...   235   3e-62
01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626...   234   6e-62
04_04_1146 + 31249488-31249722,31250145-31250236,31251158-312512...    28   8.5  

>01_06_1660 +
           38966999-38967001,38967685-38967757,38967841-38967923,
           38968042-38968168,38968260-38968339,38968428-38968544,
           38968711-38968845,38969046-38969215,38969300-38969417
          Length = 301

 Score =  235 bits (576), Expect = 3e-62
 Identities = 110/214 (51%), Positives = 146/214 (68%)
 Frame = +3

Query: 222 QDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAA 401
           QDKNKYNTPKYR +   +NKD+T Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAA
Sbjct: 40  QDKNKYNTPKYRFV---TNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAA 96

Query: 402 YSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGAR 581
           Y TG                          +Y VEP D     FR  LDVGL RTTTG R
Sbjct: 97  YCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEPADERR-PFRALLDVGLIRTTTGNR 155

Query: 582 VFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDS 761
           VFGA+KGA+DGGL++PHS KRF G+  + K+ ++++HR +I+G HVA+YMRS+ +++ + 
Sbjct: 156 VFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEK 215

Query: 762 FKRQFSKYIKLGVTAXAIEAIYKKAHEAXRADPS 863
           F+  FS+Y+K G+ A  +EA+YKK H A RADP+
Sbjct: 216 FQAHFSEYLKKGIDADGMEALYKKVHAAIRADPT 249



 Score = 29.1 bits (62), Expect = 4.9
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +1

Query: 109 GFVKVVKNKQYFKRYQVKF 165
           GFVK  K   Y KR+QVKF
Sbjct: 3   GFVKTQKTNAYHKRFQVKF 21



 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +2

Query: 116 LKL*RTNNTSRGTK*NSXRRREGKTDYYARKRL 214
           +K  +TN   +  +    RRR+GKTDY AR RL
Sbjct: 5   VKTQKTNAYHKRFQVKFKRRRQGKTDYRARIRL 37


>01_06_1659 +
           38961637-38961639,38962361-38962433,38962531-38962613,
           38962732-38962858,38962950-38963029,38963112-38963228,
           38963393-38963527,38963714-38963883,38963970-38964087
          Length = 301

 Score =  234 bits (573), Expect = 6e-62
 Identities = 109/214 (50%), Positives = 146/214 (68%)
 Frame = +3

Query: 222 QDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAA 401
           QDKNKYNTPKYR +   +NKD+T Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAA
Sbjct: 40  QDKNKYNTPKYRFV---TNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAA 96

Query: 402 YSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGAR 581
           Y TG                          +Y VEP D     FR  LDVGL RTTTG R
Sbjct: 97  YCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVEPADERR-PFRALLDVGLIRTTTGNR 155

Query: 582 VFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDS 761
           VFGA+KGA+DGGL++PHS KRF G+  + K+ ++++HR +I+G HVA+YMRS+ +++ + 
Sbjct: 156 VFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEK 215

Query: 762 FKRQFSKYIKLGVTAXAIEAIYKKAHEAXRADPS 863
           F+  FS+Y+K G+ A  +E++YKK H A RADP+
Sbjct: 216 FQAHFSEYLKKGIDADGMESLYKKVHAAIRADPT 249



 Score = 31.5 bits (68), Expect = 0.92
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = +1

Query: 109 GFVKVVKNKQYFKRYQVKF 165
           GFVK  K   YFKR+QVKF
Sbjct: 3   GFVKTQKTHAYFKRFQVKF 21


>04_04_1146 +
           31249488-31249722,31250145-31250236,31251158-31251209,
           31251377-31251477,31251587-31252020,31252453-31252507,
           31252614-31252667,31252774-31253190
          Length = 479

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = +3

Query: 606 VDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRS-LEQDDEDSFKRQFSK 782
           VDG  +VP    +  G DA ++   A  HR  +   HV   ++  L   + D F    + 
Sbjct: 329 VDGDGSVPVESAKADGLDAVARVGVAADHRGIVCDRHVFRIIQHWLHAGEPDPFYDPLND 388

Query: 783 YIKLGVTAXAIEAIYKK 833
           Y+ L  TA  IE  ++K
Sbjct: 389 YVIL-PTAFEIEKYHEK 404


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,549,551
Number of Sequences: 37544
Number of extensions: 457440
Number of successful extensions: 977
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)