Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_A05
(890 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 393 e-110
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 243 3e-65
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 224 1e-59
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 145 6e-36
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 93 6e-20
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 72 1e-13
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 70 5e-13
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 63 4e-11
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 54 3e-08
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 36 0.008
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.13
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.67
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 29 1.2
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 28 1.6
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 1.6
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 1.6
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 3.6
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 27 3.6
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 3.6
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 6.3
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 26 8.3
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 26 8.3
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 393 bits (967), Expect = e-110
Identities = 186/211 (88%), Positives = 195/211 (92%)
Frame = +3
Query: 132 PRNTPXLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGD 311
P P LLTEAPLNPK+NREKMTQI+FETFN PA YVAIQAVLSLYASGRTTGIVLDSGD
Sbjct: 98 PEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGD 157
Query: 312 GVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLC 491
GV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKIL ERGY+F+TTAEREIVRDIKEKLC
Sbjct: 158 GVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTFSTTAEREIVRDIKEKLC 217
Query: 492 YVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHET 671
YVALDFEQE+ TAA SSSLEKSYELPDGQVITIGNERFR PEALFQPS LG+E GIHE
Sbjct: 218 YVALDFEQELQTAAQSSSLEKSYELPDGQVITIGNERFRAPEALFQPSALGLENAGIHEA 277
Query: 672 TYNSIMKCDVDIRKDLYANTVLSGGTTMYPG 764
TYNSIMKCDVDIRKDLY N V+SGGTTMYPG
Sbjct: 278 TYNSIMKCDVDIRKDLYGNVVMSGGTTMYPG 308
Score = 61.3 bits (142), Expect = 2e-10
Identities = 24/29 (82%), Positives = 25/29 (86%)
Frame = +1
Query: 58 GIVTNWDDMEKIWHHTFYNELRVSPRGTP 144
GIV NWDDMEKIWHHTFYNELRV+P P
Sbjct: 74 GIVNNWDDMEKIWHHTFYNELRVAPEEHP 102
Score = 45.2 bits (102), Expect = 1e-05
Identities = 18/23 (78%), Positives = 22/23 (95%)
Frame = +2
Query: 818 RLRIIAPPERKYSVWIGGXILAS 886
+++I+APPERKYSVWIGG ILAS
Sbjct: 326 KVKIVAPPERKYSVWIGGSILAS 348
Score = 37.9 bits (84), Expect = 0.002
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +1
Query: 766 IADRMQKEITALAPSTMKIK 825
IADRMQKEI ALAPS+MK+K
Sbjct: 309 IADRMQKEIQALAPSSMKVK 328
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 243 bits (594), Expect = 3e-65
Identities = 113/211 (53%), Positives = 150/211 (71%)
Frame = +3
Query: 132 PRNTPXLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGD 311
PR LLTE P+NP ANREKM + MFE + +YVAIQAVLSLYA G ++G+V+DSGD
Sbjct: 98 PRGRKILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGD 157
Query: 312 GVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLC 491
GV+H VP+YE L H + RLD+AGRD T YL+ +L +GY+F TA+ E VR++KEKLC
Sbjct: 158 GVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLRKGYAFNRTADFETVREMKEKLC 217
Query: 492 YVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHET 671
YV+ D E + + ++ L ++Y LPDG+VI +G+ER+ CPE LFQP +G E G+ E
Sbjct: 218 YVSYDLELDHKLSEETTVLMRNYTLPDGRVIKVGSERYECPECLFQPHLVGSEQPGLSEF 277
Query: 672 TYNSIMKCDVDIRKDLYANTVLSGGTTMYPG 764
+++I DVDIRK LY VLSGG++MY G
Sbjct: 278 IFDTIQAADVDIRKYLYRAIVLSGGSSMYAG 308
Score = 36.3 bits (80), Expect = 0.006
Identities = 10/27 (37%), Positives = 22/27 (81%)
Frame = +1
Query: 58 GIVTNWDDMEKIWHHTFYNELRVSPRG 138
GI+ ++++M ++W +TF+ +L++ PRG
Sbjct: 74 GIIRDFEEMNQLWDYTFFEKLKIDPRG 100
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 224 bits (548), Expect = 1e-59
Identities = 103/211 (48%), Positives = 143/211 (67%)
Frame = +3
Query: 132 PRNTPXLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGD 311
P P LLTE PL N+EK+ + +ET N PA+ ++Q VL+LYAS RTTGIVL+ GD
Sbjct: 103 PEEHPLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPVLALYASARTTGIVLECGD 162
Query: 312 GVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLC 491
G++H+VPIY+G+++P AI + ++ GRD+TDYL L + G+ ++AE+EIVR+IKEK C
Sbjct: 163 GLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKSGHELVSSAEKEIVREIKEKCC 222
Query: 492 YVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHET 671
YVA DF E+ + +Y+LPD Q IT+G E F PE LF P +G EA G+H
Sbjct: 223 YVASDFRSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEVLFNPEMMGSEASGLHIQ 282
Query: 672 TYNSIMKCDVDIRKDLYANTVLSGGTTMYPG 764
+ SI+ D+D+R LY+N VLSGG+T+ G
Sbjct: 283 LFKSILLSDIDLRSTLYSNIVLSGGSTLLRG 313
Score = 31.9 bits (69), Expect = 0.13
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +2
Query: 818 RLRIIAPPERKYSVWIGGXILAS 886
+++I A PER ++ W+GG ILAS
Sbjct: 331 QVKIYASPERMHNAWLGGSILAS 353
Score = 30.7 bits (66), Expect = 0.29
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +1
Query: 58 GIVTNWDDMEKIWHHTFYN-ELRVSPRGTP 144
GI+ NW DME+IW + + + +L P P
Sbjct: 78 GIIQNWSDMEEIWSYIYSDQQLNTLPEEHP 107
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 145 bits (352), Expect = 6e-36
Identities = 92/230 (40%), Positives = 126/230 (54%), Gaps = 17/230 (7%)
Frame = +3
Query: 132 PRNTPXLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------T 287
P + LLTE PLNP NRE +IMFE+FN +Y+A+QAVL+L AS + T
Sbjct: 121 PEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLT 180
Query: 288 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY--SFTTTAERE 461
G V+DSGDGV+H +P+ EGY + +I + LAGRD+T ++ +L +R S TAER
Sbjct: 181 GTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER- 239
Query: 462 IVRDIKEKLCYVALDFEQEMA--TAASSSSLEKSYELPDGQ--VITIGNERFRCPEALFQ 629
IKE+ CYV D +E + L+ + E G I +G ERF PE F
Sbjct: 240 ----IKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFN 295
Query: 630 PSFLGME-ACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYP--GNR 770
P + + E N + +D+RK LY N VLSGG+T++ GNR
Sbjct: 296 PEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNR 345
Score = 31.1 bits (67), Expect = 0.22
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 58 GIVTNWDDMEKIWHHTFYNELRVSP 132
G + NWD ME+ W + + LR P
Sbjct: 97 GQIENWDHMERFWQQSLFKYLRCEP 121
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 92.7 bits (220), Expect = 6e-20
Identities = 61/196 (31%), Positives = 95/196 (48%), Gaps = 20/196 (10%)
Frame = +3
Query: 291 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR 470
+V+DSG +H +P+ + A+ R+D+ G+ LT+YL ++++ R Y+ E IV
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNM--MEETYIVN 216
Query: 471 DIKEKLCYVALDFEQEMATAASS--SSLEKSYELPD------------------GQVITI 590
+IKE +CYV+ +F+++M S LE Y LPD QV+ +
Sbjct: 217 EIKESVCYVSQNFKEDMEICHEKPRSKLEICYALPDYSTGKHGYIVRDINQKIEQQVLNL 276
Query: 591 GNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGNR 770
NERF PE LF PS + + GI E S+ +I+ L N V GG +PG
Sbjct: 277 SNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFH 336
Query: 771 RPYAKGNHSSRPIDNE 818
+ + S P + E
Sbjct: 337 KRLSSELRSLAPANWE 352
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 71.7 bits (168), Expect = 1e-13
Identities = 43/119 (36%), Positives = 62/119 (52%), Gaps = 9/119 (7%)
Frame = +3
Query: 435 SFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCP 614
S+ +R ++ + KE + V LD + A A+S + K +E PDG G ERFR
Sbjct: 243 SYEIFQKRRVIEEWKESVLDV-LDTPFDEAKASSRNP--KPFEFPDGVTHKFGQERFRIS 299
Query: 615 EALFQPSFLGMEAC---------GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPG 764
E LF PSF + G+HE Y SI+ CD ++R L N V++GGT++ PG
Sbjct: 300 EILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELRSPLLNNIVVTGGTSLIPG 358
Score = 56.0 bits (129), Expect = 7e-09
Identities = 26/103 (25%), Positives = 51/103 (49%)
Frame = +3
Query: 132 PRNTPXLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGD 311
P ++TE NP++ R+++ + FE + PA Y+ QAV +A+ ++T +++D G
Sbjct: 99 PTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIGS 158
Query: 312 GVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 440
+ P+ +G + I + LAG L + ++ F
Sbjct: 159 DNASVTPVVDGLIIRKGIFKQSLAGDFLNANIEQLFNTMNIEF 201
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 69.7 bits (163), Expect = 5e-13
Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 2/139 (1%)
Frame = +3
Query: 144 PXLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR--TTGIVLDSGDGV 317
P +TE NP R MT+++FE +N P++ I + S Y + + ++GIVL+ G+
Sbjct: 117 PICMTEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAA 176
Query: 318 SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYV 497
SH +P+ G + R+ G + YL+K+ + SF + C+V
Sbjct: 177 SHVIPVLNGERILSEAKRISWGGSQSSSYLLKLFQIKYPSFPIKMLPSQAELLMHDHCHV 236
Query: 498 ALDFEQEMATAASSSSLEK 554
+ D+ ++A A LE+
Sbjct: 237 SSDYTHDIAHALDRDILER 255
Score = 41.5 bits (93), Expect = 2e-04
Identities = 17/56 (30%), Positives = 33/56 (58%)
Frame = +3
Query: 597 ERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPG 764
E+ R PE +F PS +G++ GI E + + + ++ ++ L +N +++GG PG
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPG 649
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 63.3 bits (147), Expect = 4e-11
Identities = 37/115 (32%), Positives = 55/115 (47%)
Frame = +3
Query: 90 DLASYLLQ*AACQPPRNTPXLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLY 269
DL Y L+ P P L+TE NP NR K + MFE+ PA Y+A Q + +
Sbjct: 82 DLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMFESLRCPATYLAKQETCAAF 141
Query: 270 ASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY 434
ASG+ T ++D G S IY+G+ L +G + D L + L ++ +
Sbjct: 142 ASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGNAINDILAQTLRDKNF 196
Score = 37.1 bits (82), Expect = 0.003
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +3
Query: 657 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPG 764
GI + N I +CDVDIR L N ++ GGT++ G
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQG 361
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 54.0 bits (124), Expect = 3e-08
Identities = 31/100 (31%), Positives = 49/100 (49%)
Frame = +3
Query: 183 NREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHA 362
+RE TQ FE P +A + ++ LYA G G+V+D G + PI +G + A
Sbjct: 161 DRELATQFFFEECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTA 220
Query: 363 ILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKE 482
+L L GR +T +L +L E + ++ + DI E
Sbjct: 221 TQQLPLGGRYMTQHLQNLLRESLPTLKSSGQYVSKEDITE 260
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 35.9 bits (79), Expect = 0.008
Identities = 17/84 (20%), Positives = 42/84 (50%)
Frame = +3
Query: 189 EKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAIL 368
EK+ I+F + + +++ + + +G + V+D G + + EG +P++ +
Sbjct: 260 EKILDILFFDLHFGKAAIVQESLCTSFGAGMSAACVVDMGAQKTSISCVEEGVVVPNSRI 319
Query: 369 RLDLAGRDLTDYLMKILTERGYSF 440
+++ G D+T MK+L + +
Sbjct: 320 KINYGGDDITLLFMKLLMRSHFPY 343
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.9 bits (69), Expect = 0.13
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = +1
Query: 232 PCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPS 366
P T+P P T PV P S P+ P P PS+ P PS
Sbjct: 1037 PSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
Score = 27.1 bits (57), Expect = 3.6
Identities = 16/46 (34%), Positives = 19/46 (41%)
Frame = +1
Query: 229 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPS 366
PP +P P P VPP P+T P P PS P P+
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPP-----PSTAPPVPTPSAGLPPVPVPT 1233
Score = 26.6 bits (56), Expect = 4.7
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Frame = +1
Query: 229 PPCTSPSKPCSRCTRP--VVPPVSCWTPATVSPTPCPSTRDTHSPTPS 366
PP PS +P VPPV P+ P P PS P PS
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPA--PSGAPPVPKPSVAAPPVPVPS 1137
Score = 25.8 bits (54), Expect = 8.3
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Frame = +1
Query: 229 PPCTSPSKPCSRCTRPV--VPPVSCWTPATVSPTPCPSTRDTHSPTPS 366
PP +PS +P VPPV P+ P P PS P PS
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVP--PPSEAPPVPKPSVGVPPVPPPS 1214
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.5 bits (63), Expect = 0.67
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +1
Query: 208 CSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTRDTHSPTPS 366
C+ ++ PP T S S P VPP S T + PT ST SP P+
Sbjct: 172 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 224
Score = 28.3 bits (60), Expect = 1.6
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +1
Query: 208 CSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTRDTHSPTPS 366
C+ ++ PP T S S P VPP S T + PT ST +P P+
Sbjct: 115 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPT 167
Score = 25.8 bits (54), Expect = 8.3
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = +1
Query: 220 STRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTRDTHSPTPS 366
ST P T S S P VPP S T + PT ST SP P+
Sbjct: 232 STSIP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 280
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 28.7 bits (61), Expect = 1.2
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = +1
Query: 463 SFVTSRRSCATSLLTSSRRWPPLHPAAPSRSLTNFPTVRSS----PLETKDSVAQRLSSN 630
+F +R S A SS R P +P+AP+R PTV++S P+++ + VA +
Sbjct: 335 AFTANRFSPAAPTTVSSERNAPPYPSAPTRPTP--PTVQTSSSAAPVDSAEPVAYQPIKK 392
Query: 631 P 633
P
Sbjct: 393 P 393
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 28.3 bits (60), Expect = 1.6
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 505 TSSRRWPPLHPAAPSRSLTNFPTVRSSPLETKDSVAQRLSSNPRS 639
TS R PP + + SL N P RSS +E D V + P++
Sbjct: 47 TSIARRPPSTVGSQTGSLVNAPPKRSSGIERFDHVTGTAENRPQT 91
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +1
Query: 253 PCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSP 357
PC+ + PPV+C TP P C + H P
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.3 bits (60), Expect = 1.6
Identities = 30/133 (22%), Positives = 45/133 (33%), Gaps = 4/133 (3%)
Frame = +1
Query: 229 PPCTSPSKPCSRCTRPVVPPVSCWTP----ATVSPTPCPSTRDTHSPTPSCVWT*PVXXX 396
PP PS P P +PP + P + P P P P+ PV
Sbjct: 432 PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVASI 491
Query: 397 XXXXXXXXXXXXXXXXXXXXGKSFVTSRRSCATSLLTSSRRWPPLHPAAPSRSLTNFPTV 576
G + SR+ A+ + S++ P A PS +L + +
Sbjct: 492 AELPQQDGRANLMASIRASGGMDLLKSRKVSASPSVASTKTSNPPVEAPPSNNLMD--AL 549
Query: 577 RSSPLETKDSVAQ 615
S+ + K VAQ
Sbjct: 550 ASALNQRKTKVAQ 562
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 253 PCSRCTRPVVPPVSCWTPATVSPTPCPST 339
P SR T+P+ S +P VSP PST
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPST 290
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 27.1 bits (57), Expect = 3.6
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +1
Query: 514 RRWPPL--HPAAPSRSLTNFPTVRSSPLETKDSVAQRLSSNPRSWV 645
+ WP L HP P R P++ + P++T S + S +P S+V
Sbjct: 112 KHWPSLKPHPLPPKRVSLGIPSISNPPVDTVISDSP-TSPHPPSFV 156
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +1
Query: 229 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPS 336
PP P + T PV PV+ A P P P+
Sbjct: 367 PPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPA 402
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 6.3
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 150 LLTEAPLNPKANREKMTQIMFETFN 224
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.8 bits (54), Expect = 8.3
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +1
Query: 235 CTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPSCVWT 378
C +PS+ C + PV + T S TP P+T + +PTP+ T
Sbjct: 825 CYNPSQ--YGCDNGALGPVQS-SSTTSSITPTPTTTSSITPTPTTTST 869
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 25.8 bits (54), Expect = 8.3
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = +1
Query: 472 TSRRSCATSLLTSSRRWPPLHPAAP--SRSLTNFP-TVRSSPLETKDSVAQRLSSN 630
+S +T+L T+S + +AP S S T++P T S+PL T D+V + SN
Sbjct: 73 SSDDGASTALPTTSTESVVVTTSAPAASSSATSYPATFVSTPLYTMDNVTAPVWSN 128
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,856,878
Number of Sequences: 5004
Number of extensions: 86862
Number of successful extensions: 369
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -