Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_A05
         (890 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             179   4e-47
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    23   4.9  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    23   4.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   6.5  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  179 bits (435), Expect = 4e-47
 Identities = 83/83 (100%), Positives = 83/83 (100%)
 Frame = +3

Query: 516 EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKC 695
           EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKC
Sbjct: 1   EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKC 60

Query: 696 DVDIRKDLYANTVLSGGTTMYPG 764
           DVDIRKDLYANTVLSGGTTMYPG
Sbjct: 61  DVDIRKDLYANTVLSGGTTMYPG 83



 Score = 45.2 bits (102), Expect = 8e-07
 Identities = 21/35 (60%), Positives = 27/35 (77%)
 Frame = +2

Query: 782 KRKSQLSPHRQ*RLRIIAPPERKYSVWIGGXILAS 886
           K  + L+P    +++IIAPPE+KYSVWIGG ILAS
Sbjct: 90  KEITALAPSTM-KIKIIAPPEKKYSVWIGGSILAS 123



 Score = 42.3 bits (95), Expect = 6e-06
 Identities = 20/20 (100%), Positives = 20/20 (100%)
 Frame = +1

Query: 766 IADRMQKEITALAPSTMKIK 825
           IADRMQKEITALAPSTMKIK
Sbjct: 84  IADRMQKEITALAPSTMKIK 103


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -1

Query: 614 WATESFVSNGDDLTVGKFVRLLEGAAGCSGGHLLLEVKSDVAQLL 480
           WAT      G+    G F  +L G    +GG L+L +  ++  LL
Sbjct: 260 WATIYKTEGGNAFFKGAFSNILRG----TGGALVLVLYDEIKNLL 300


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -1

Query: 614 WATESFVSNGDDLTVGKFVRLLEGAAGCSGGHLLLEVKSDVAQLL 480
           WAT      G+    G F  +L G    +GG L+L +  ++  LL
Sbjct: 260 WATIYKTEGGNAFFKGAFSNILRG----TGGALVLVLYDEIKNLL 300


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 12/34 (35%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
 Frame = +2

Query: 350 TP-PRHPASGLSRSRPHRLPHEDPHRARLLVHYH 448
           TP P H   G   S  H  PH     A    H H
Sbjct: 411 TPGPHHHTMGHGHSHIHATPHHHHSHAATPHHQH 444


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 269,939
Number of Sequences: 438
Number of extensions: 6629
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)