Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_A03
         (944 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.72 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.3  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.8  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   8.9  
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    26   8.9  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.5 bits (63), Expect = 0.72
 Identities = 28/83 (33%), Positives = 28/83 (33%), Gaps = 1/83 (1%)
 Frame = -3

Query: 912 GGXPXRGGXXKXPPPXPXGEKRXKXXPXXXPRXGKXGGPXGGXPXGXXXXXXKXPXGGXP 733
           GG    GG    PPP P G              G  GG  GG P G          GG P
Sbjct: 188 GGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGG-FGGGPGG--FEGGPGGFGGGP 244

Query: 732 PQXGGGXFLXXXRGG-GAXGXNP 667
              GGG  L    GG G  G  P
Sbjct: 245 GGFGGG--LGGFGGGPGGFGGGP 265



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 17/49 (34%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
 Frame = +1

Query: 526 GXXGGGXXXXPPG-GGXXVXPQXGGXPXKNXXXXGXXKGPXPXRGXXGG 669
           G  GGG    PPG GG       GG    +    G   GP    G  GG
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGG 239


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = -2

Query: 937 GGXXPPPXXGXPPPXGXXKGPPPXP 863
           GG  PPP    PPP     GPPP P
Sbjct: 759 GGPPPPP----PPPGVAGAGPPPPP 779


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = -2

Query: 943 PXGGXXPPPXXGXPPPXGXXKGPPPXPXGXKKXK 842
           P     PPP  G  PP    + PPP P G  K +
Sbjct: 6   PGNPPPPPPPPGFEPP---SQPPPPPPPGYVKKR 36



 Score = 23.0 bits (47), Expect(2) = 5.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 428 PPPXPPXRXKKKK 390
           PPP PP   KK+K
Sbjct: 25  PPPPPPGYVKKRK 37



 Score = 21.4 bits (43), Expect(2) = 5.7
 Identities = 11/27 (40%), Positives = 11/27 (40%), Gaps = 2/27 (7%)
 Frame = -1

Query: 596 PPXWGXTXXPPPGGX--KXXPPPXXPG 522
           PP       PPPG       PPP  PG
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPG 31


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = -2

Query: 925  PPPXXGXPPPXGXXKGPPP 869
            PPP    P P G    PPP
Sbjct: 1715 PPPPSAPPMPAGPPSAPPP 1733


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 14/36 (38%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
 Frame = -1

Query: 944 PXGRGXP---PPXXGXXPXXGEXKRXPPPPXGXKKG 846
           P GRG P    P     P  G     PPPP G  +G
Sbjct: 103 PAGRGIPLGQAPVGLAGPVRGVGYTAPPPPAGFGRG 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,990,900
Number of Sequences: 5004
Number of extensions: 27325
Number of successful extensions: 85
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)