Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_P24
         (1292 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0299 - 17051570-17052474,17053542-17053755                       31   2.0  
07_03_0600 + 19866757-19867218,19867920-19868429                       30   3.5  
04_04_1125 + 31085106-31085714                                         29   6.0  

>12_02_0299 - 17051570-17052474,17053542-17053755
          Length = 372

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 22/73 (30%), Positives = 27/73 (36%), Gaps = 2/73 (2%)
 Frame = -1

Query: 533 PPLTXSFPR--YPPIXWITVXPPXXXXXPXPXXEXPCPXSQ*XRKRXSAXYXXPLYPGRW 360
           PP+    PR  +PPI ++T  PP     P P      P S          +  PL P  W
Sbjct: 215 PPIPFCTPRPWFPPIPFLTPPPPPFLPFPLPPIPFLTPPSP-----PPPAFPFPLPPWPW 269

Query: 359 PXXXCXXNLPHLP 321
                    PHLP
Sbjct: 270 APPPAFP-FPHLP 281


>07_03_0600 + 19866757-19867218,19867920-19868429
          Length = 323

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 17/58 (29%), Positives = 21/58 (36%)
 Frame = -1

Query: 590 PYXXTPXTRPPYXSWXSXGPPLTXSFPRYPPIXWITVXPPXXXXXPXPXXEXPCPXSQ 417
           PY       PP+  +   GPP     P+ PP  W    PP     P P  +   P  Q
Sbjct: 41  PYCQQQQPLPPH--YYQAGPPHAPP-PQQPPAMWGQPPPPPPQYAPPPPQQFQLPHQQ 95


>04_04_1125 + 31085106-31085714
          Length = 202

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 16/50 (32%), Positives = 18/50 (36%)
 Frame = -1

Query: 575 PXTRPPYXSWXSXGPPLTXSFPRYPPIXWITVXPPXXXXXPXPXXEXPCP 426
           P T+PP        P  T + P  PP  W    PP     P P    P P
Sbjct: 35  PTTKPPPPPCQPPPPTPTPATPTTPPTPW--TPPPATPTPPTPTPWTPTP 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,881,076
Number of Sequences: 37544
Number of extensions: 114942
Number of successful extensions: 187
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4027319592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)