Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_P23
(1232 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 316 4e-87
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 61 3e-10
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 41 3e-04
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 40 7e-04
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 32 0.19
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 4.0
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c... 27 5.3
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch... 27 7.1
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 27 7.1
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-... 26 9.3
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 316 bits (776), Expect = 4e-87
Identities = 163/233 (69%), Positives = 181/233 (77%), Gaps = 1/233 (0%)
Frame = +2
Query: 335 DNLPPILNALEVQ-NRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIP 511
D+LP ILNALEV+ + RLVLEVAQH+GENTVRTIAMDGTEGLVRG V+D+GSPI IP
Sbjct: 73 DSLPSILNALEVKLPDNKRLVLEVAQHVGENTVRTIAMDGTEGLVRGTAVIDTGSPISIP 132
Query: 512 VGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAP 691
VG TLGRI+NVIGEP+DERGPI K + IHA+AP F + S EIL TGIKVVDLLAP
Sbjct: 133 VGPGTLGRIMNVIGEPVDERGPIKAVKYSPIHADAPSFEEQSTTPEILETGIKVVDLLAP 192
Query: 692 YAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGXRTREGNDLYHEMIESGV 871
YA TV I ELINN+AKAHGGYSVF GVG RTREGNDLY EM E+GV
Sbjct: 193 YARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGYSVFTGVGERTREGNDLYREMQETGV 252
Query: 872 ISLKDKTSKVALXYGQMNXPPGARARVALTGLTVAEYFRDQKGKDVLLFXXNI 1030
I L+ + SK AL +GQMN PPGARARVALTGLTVAEYFRD +G+DVLLF NI
Sbjct: 253 IKLEGE-SKAALVFGQMNEPPGARARVALTGLTVAEYFRDIEGQDVLLFIDNI 304
Score = 33.9 bits (74), Expect = 0.047
Identities = 15/17 (88%), Positives = 17/17 (100%)
Frame = +1
Query: 1030 FRFTQAGSKMSALLGRI 1080
FRFTQAGS++SALLGRI
Sbjct: 305 FRFTQAGSEVSALLGRI 321
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 61.3 bits (142), Expect = 3e-10
Identities = 53/219 (24%), Positives = 96/219 (43%), Gaps = 8/219 (3%)
Frame = +2
Query: 401 VAQHLGENTVRTIAMDGTEGLVR-GQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGP 577
+A +L +TV + G + LVR G+ V + + +PVG LGR+++ +G PID +GP
Sbjct: 90 MALNLEADTVGCVLF-GNDRLVREGEVVKRTRHIVDVPVGEALLGRVVDALGNPIDGKGP 148
Query: 578 IPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIM 757
I T + + +AP + + E + TG+K +D + P T + +
Sbjct: 149 IKTTERRRVQLKAPGILPRTSVCEPMQTGLKAIDSMVPIGRGQRELIIGDRQTGKTAIAL 208
Query: 758 ELINNVAKAHGG-------YSVFAGVGXRTREGNDLYHEMIESGVISLKDKTSKVALXYG 916
+ I N + + Y V+ VG + L ++ E+ + K S +
Sbjct: 209 DTILNHKRWNNSSDESKKLYCVYVAVGQKRSTVAQLVQKLEENDSL----KYSIIVAATA 264
Query: 917 QMNXPPGARARVALTGLTVAEYFRDQKGKDVLLFXXNIS 1033
+ P + +G + E+FRD GK L+ ++S
Sbjct: 265 SESAP--LQYLAPFSGCAMGEWFRD-NGKHGLVVYDDLS 300
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 41.1 bits (92), Expect = 3e-04
Identities = 40/150 (26%), Positives = 64/150 (42%), Gaps = 3/150 (2%)
Frame = +2
Query: 593 TAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINN 772
T + A P +++ Q +L TG +V+D L P TV+ L
Sbjct: 216 TWPVRAARPVADNLTANQPLL-TGQRVLDALYPCVQGGTTAIPGAFGCGKTVISQSLSKY 274
Query: 773 VAKAHGGYSVFAGVGXRTREGNDLYHEMIESGV-ISLKDKT--SKVALXYGQMNXPPGAR 943
++ V+ G G R E ++ + E + I+ K + + L N P AR
Sbjct: 275 ---SNSDLIVYVGCGERGNEMAEVLMDFPELTIDINGKPEPIMKRTTLVANTSNMPVAAR 331
Query: 944 ARVALTGLTVAEYFRDQKGKDVLLFXXNIS 1033
TG+T+AEY+RDQ GK+V + + S
Sbjct: 332 EASIYTGITLAEYYRDQ-GKNVSMMADSTS 360
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 39.9 bits (89), Expect = 7e-04
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Frame = +2
Query: 392 VLEVAQHLGENTVRTIAMDGTEGL-VRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 568
VLEVA H V +GT G+ VR + +G +RIPV + LGR+ N G PID+
Sbjct: 63 VLEVAGHKAIVQV----FEGTSGVDVRKTTIDFTGHSMRIPVSEDMLGRVFNGSGLPIDK 118
Query: 569 RGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVD 679
+ + I+ +E++ TGI +D
Sbjct: 119 GPNLLAEDYLDINGSPINPYARIYPEEMIQTGISSID 155
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 31.9 bits (69), Expect = 0.19
Identities = 24/90 (26%), Positives = 38/90 (42%)
Frame = -3
Query: 666 IPVTRISCCTDMSTNSGASAWIAAVLSVGMGPRSSIGSPITLMMRPRVSAPTGIRMGEPE 487
+P T SC T S +G S+ ++ ++ + P S+ + I + S T P
Sbjct: 222 LPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTN-SSPLPT 280
Query: 486 SSTGCPRTKPSVPSMAMVRTVFSPKCCATS 397
+ST C T S+P T +P TS
Sbjct: 281 TSTSC-TTSTSIPPTGNSTTPVTPTVPPTS 309
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 27.5 bits (58), Expect = 4.0
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -3
Query: 576 GPRSSIGSPITLMMRPRVSA-PTGIRMGEPESSTGCPRTKPSVPSM 442
G R++ G+P + R+++ PT I PES K S PS+
Sbjct: 154 GKRTAPGNPWAIRSAERLASNPTSIGTSSPESIDNNSNNKKSAPSL 199
>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 585
Score = 27.1 bits (57), Expect = 5.3
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +3
Query: 42 RXPALDGSLRKXFVIFVTSSILLCCLSTKFSKILSKCFLLSAE*AVW 182
R P L SL F+ V ++ ++ + +S+CF+L+ W
Sbjct: 334 RVPLLQNSLLSSFIAIVKPNLTFTDIANRLGISVSECFILAKHLIHW 380
>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 26.6 bits (56), Expect = 7.1
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
Frame = +2
Query: 383 PRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPI 562
P + E +H G N+ EG+V+ L++ P+ IPV + N IGE
Sbjct: 10 PAIKNEPPKHYGPNSA------DREGIVKAYKELEAELPVTIPVIIDGKEVETNTIGE-- 61
Query: 563 DERGPIPTDKTAA-IHAEAPEFVDMSVQQEILVTGIKVVDLLAPYA 697
+R P K A H + V+ ++ E + G KV + L P+A
Sbjct: 62 -QRCPFEHKKVVARYHRAGAKHVEDAI--EAALRGKKVWESL-PFA 103
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 26.6 bits (56), Expect = 7.1
Identities = 7/23 (30%), Positives = 17/23 (73%)
Frame = -1
Query: 917 DHIXELPWMFCLLEKSHQIQSSR 849
D + ++ W +C+L++ H I+++R
Sbjct: 1481 DELVKIDWNYCVLDEGHVIKNAR 1503
>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
L-lysine forming] |Schizosaccharomyces pombe|chr
1|||Manual
Length = 368
Score = 26.2 bits (55), Expect = 9.3
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -1
Query: 362 GHLGSAASCLQTEHPLRHQ*RQLP 291
G GSA SCL H L H +Q P
Sbjct: 140 GFAGSAISCLVWAHQLLHPNKQFP 163
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,433,921
Number of Sequences: 5004
Number of extensions: 91083
Number of successful extensions: 247
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 669373152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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