Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_P21
         (1248 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...   105   2e-23
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    83   1e-16
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    28   2.4  
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    26   9.5  

>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score =  105 bits (251), Expect = 2e-23
 Identities = 70/224 (31%), Positives = 107/224 (47%)
 Frame = +1

Query: 238 LHAEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIV 417
           L +E ++ LP  V+RRI  LR LQK + D+E++F  E+                 R+ +V
Sbjct: 63  LTSEGVSELPEAVQRRISGLRGLQKRYSDLESQFQKELFELEKAYAKKYAPIFKRRSEVV 122

Query: 418 NGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFW 597
            G  EP ++E         ++ E A   +    T  E KK +         + KGIP+FW
Sbjct: 123 RGADEPTEEEI--------KKGEAADENEKKEPTSSESKKQEGG------DDTKGIPEFW 168

Query: 598 YNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAPNEYFTNTVLTKEY 777
               +NV  LSEM+   DE  L  L DI++   E P  F LEF FA N +FTN +LTK Y
Sbjct: 169 LTAMKNVLSLSEMITPEDEGALSHLVDIRISYMEKP-GFKLEFEFAENPFFTNKILTKTY 227

Query: 778 LMKCKPDEESPLXFEGPEIYSCKGCEINWNAG*NVTVKTIKXKR 909
               +    +   ++  E     G +++W    ++TV+T+  K+
Sbjct: 228 YYMEESGPSNVFLYDHAE-----GDKVDWKENADLTVRTVTKKQ 266


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 82.6 bits (195), Expect = 1e-16
 Identities = 81/250 (32%), Positives = 113/250 (45%), Gaps = 11/250 (4%)
 Frame = +1

Query: 193 SGVTRNE--MIAAITNRLHAEA------MASLPPNVRRRIRALRTLQKEFVDIEAKFYSE 348
           SG+ RN   M++ I  RL +        + SL P V+ RI AL+ LQK+   I+ +F  +
Sbjct: 56  SGLLRNNPAMLSMIEGRLSSLVGKSSGYIESLAPAVQNRITALKGLQKDCDAIQYEFRQK 115

Query: 349 VHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGE 528
           +                 RA I+ G  EP DDE       D EEE      QN       
Sbjct: 116 MLDLETKYEKKYQPIFSRRAEIIKGVSEPVDDEL------DHEEE----IFQNNL----- 160

Query: 529 EKKDDKAIEPPMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIK-VQMHEDP 705
                        P+ KGIP+FW     NV ++ EM+   DE +L+ L DI+   +  D 
Sbjct: 161 -------------PDPKGIPEFWLTCLHNVFLVGEMITPEDENVLRSLSDIRFTNLSGDV 207

Query: 706 ISFTLEFYFAPNEYFTNTVLTKEYLMKCKPDEESPLXFEGPEIYS-CKGCEINW-NAG*N 879
             + LEF F  N+YFTN +LTK Y  K   D+ SP    G  +Y   +G +INW     N
Sbjct: 208 HGYKLEFEFDSNDYFTNKILTKTYYYK---DDLSP---SGEFLYDHAEGDKINWIKPEKN 261

Query: 880 VTVKTIKXKR 909
           +TV+    K+
Sbjct: 262 LTVRVETKKQ 271


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +3

Query: 222 GHHKSPSCRSDGIPTPECSSANPRLENSSEGVCRH*GQVL 341
           GHHK+P CR+  +      S N R E   + V RH G V+
Sbjct: 485 GHHKNPKCRAKKLVV---ESRNGRREYVQDAVRRH-GDVI 520


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 502 QNAAITEGEEKKDDKAIEPPMDPNVKGIP 588
           +N+ + E EEK D +AIE   + +V G P
Sbjct: 554 KNSLVNEAEEKNDLEAIEAAKNFHVNGKP 582


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,809,281
Number of Sequences: 5004
Number of extensions: 74856
Number of successful extensions: 240
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 679334062
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)