Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_P20
         (1291 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.4  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   2.4  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.3  
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    27   5.6  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    27   5.6  
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual      27   7.4  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    27   7.4  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 12/21 (57%), Positives = 12/21 (57%), Gaps = 2/21 (9%)
 Frame = -1

Query: 418  PPPXXPPXP--PPPVXPXPLP 362
            PPP  PP P  PP   P PLP
Sbjct: 1716 PPPSAPPMPAGPPSAPPPPLP 1736



 Score = 27.9 bits (59), Expect = 3.2
 Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
 Frame = -1

Query: 430  QFXGPPPXXPPXPPPP---VXPXPLPXPLP 350
            Q   PP    P PPPP   V P P   P+P
Sbjct: 1695 QSAAPPQMSAPTPPPPPMSVPPPPSAPPMP 1724


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -1

Query: 418 PPPXXPPXPPPPVXPXPLPXP 356
           PPP  PP   PP  P P P P
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30



 Score = 27.9 bits (59), Expect = 3.2
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -1

Query: 418 PPPXXPPXPPPPVXPXPLPXPLP 350
           PP   PP PPPP    P   P P
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPP 27


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 23/79 (29%), Positives = 25/79 (31%)
 Frame = +2

Query: 752  PXPTXXNPPRAXLXXSPXXXKKPXPXXPPRKKXXXXPRTHPXXXTPXGGXPPPPXXXGXX 931
            P P    PP      +P   K P    PP       P T P   TP  G PP P      
Sbjct: 1182 PKPAAGVPPVPPPSEAPPVPK-PSVGVPP----VPPPSTAPPVPTPSAGLPPVPVPTA-- 1234

Query: 932  XXPPKXXXXXPXPXXXTPK 988
              PP        P   TP+
Sbjct: 1235 KAPPVPAPSSEAPSVSTPR 1253



 Score = 27.1 bits (57), Expect = 5.6
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -1

Query: 418  PPPXXPPXPPPPVXPXPLPXP 356
            PP   PP P P V   P+P P
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPP 1213


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 403 PPXPPPPVXPXPLPXPLP 350
           PP PP  + P P P P+P
Sbjct: 733 PPPPPAVIVPTPAPAPIP 750



 Score = 28.3 bits (60), Expect = 2.4
 Identities = 15/47 (31%), Positives = 17/47 (36%)
 Frame = +2

Query: 773 PPRAXLXXSPXXXKKPXPXXPPRKKXXXXPRTHPXXXTPXGGXPPPP 913
           PP A +  +P     P P  PP       P   P       G PPPP
Sbjct: 735 PPPAVIVPTPAPA--PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 27.1 bits (57), Expect = 5.6
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -1

Query: 421 GPPPXXPPXPPPPVXPXPLPXPLP 350
           GPPP  PP       P P P P P
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -1

Query: 418 PPPXXPPXPPPPVXPXPLPXPLP 350
           PPP     P P   P P+P P P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAP 756


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -1

Query: 412 PXXPPXPPPPVXPXPLPXPLP 350
           P  PP PP    P P P P P
Sbjct: 464 PAAPPLPPAAPAPPPAPAPAP 484



 Score = 27.1 bits (57), Expect = 5.6
 Identities = 16/63 (25%), Positives = 19/63 (30%)
 Frame = +1

Query: 832  PPPXKXGXXXQNPPXXXHPXRGXPXXPXXXGAXXXPPKTXPKXTXPGXXNPKXKGGXKXX 1011
            PP        +  P    P    P  P   G    PP + P+   P   NP      K  
Sbjct: 233  PPSIPSSRPPERVPSLSAPAP-PPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPP 291

Query: 1012 NPP 1020
             PP
Sbjct: 292  LPP 294


>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 13/25 (52%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
 Frame = -1

Query: 418 PPPXXPPXPPPPVXPXPLP--XPLP 350
           P P  PP P  PV   PLP   PLP
Sbjct: 118 PLPGEPPLPDEPVPEEPLPGEPPLP 142



 Score = 26.6 bits (56), Expect = 7.4
 Identities = 13/25 (52%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
 Frame = -1

Query: 418 PPPXXPPXPPPPVXPXPLP--XPLP 350
           P P  PP P  PV   PLP   PLP
Sbjct: 102 PLPREPPLPNEPVPEEPLPGEPPLP 126


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -1

Query: 421 GPPPXXPPXPPPPVXPXPLPXP 356
           G PP     PPPPV P P   P
Sbjct: 418 GAPPSHTYGPPPPVQPKPKISP 439


>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = +3

Query: 342 RXXGRGXGRGXGXTGGGGXGGXXGGGP 422
           R  GRG GRG G   GG  G   G  P
Sbjct: 139 RGRGRGRGRGRGRGRGGYRGRARGFAP 165


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 16/32 (50%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
 Frame = +3

Query: 330 RXXXRXXGRGXGR-GXGXTGG--GGXGGXXGG 416
           R   R  GRG  R G G  GG  GG GG  GG
Sbjct: 32  RGGARGGGRGGARGGRGGRGGARGGRGGSSGG 63



 Score = 26.2 bits (55), Expect = 9.8
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +3

Query: 351 GRGXGRGXGXTGGGGXGGXXGGG 419
           GRG   G     GGG GG  GGG
Sbjct: 17  GRGGFNGGRGGFGGGRGGARGGG 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.303    0.134    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,965,314
Number of Sequences: 5004
Number of extensions: 21534
Number of successful extensions: 160
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 703461012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.7 bits)