Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_P20
         (1291 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       29   0.066
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.82 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   1.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   1.9  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 29.5 bits (63), Expect = 0.066
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = +3

Query: 351 GRGXGRGXGXTGGGGXGGXXGGGPXNXK 434
           GRG GRG G  G  G GG  G    N K
Sbjct: 79  GRGKGRGHGKGGSRGRGGNRGRTGFNNK 106



 Score = 26.6 bits (56), Expect = 0.47
 Identities = 18/57 (31%), Positives = 20/57 (35%)
 Frame = +3

Query: 243 KKKKKKGEXXTXXKXKKXXTQKNXXXTKARXXXRXXGRGXGRGXGXTGGGGXGGXXG 413
           KK    G         +   Q N   T      R  GRG G+G G  G GG  G  G
Sbjct: 47  KKNSNSGTINESEFNDENYWQCNDKKTDIEETGRGKGRGHGKG-GSRGRGGNRGRTG 102


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.82
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -1

Query: 421 GPPPXXPPXPPPPVXP 374
           GPPP  PP  PP   P
Sbjct: 45  GPPPGGPPGAPPSQNP 60


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -3

Query: 371 PPPXPPPPXSXXPAXFXXXRVF 306
           P P PPPP S  P      ++F
Sbjct: 341 PAPPPPPPSSSGPDSAKLDKIF 362



 Score = 23.0 bits (47), Expect = 5.8
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -1

Query: 415 PPXXPPXPPPPVXPXP 368
           PP   P PPPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -3

Query: 371  PPPXPPPPXS 342
            PPP PPPP S
Sbjct: 1355 PPPPPPPPSS 1364


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.303    0.134    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,998
Number of Sequences: 438
Number of extensions: 4218
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 44303247
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.7 bits)