Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_P19
         (1299 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ...    47   0.001
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi...    42   0.035
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    40   0.19 
UniRef50_UPI00015C63F8 Cluster: hypothetical protein CKO_pCKO3p0...    37   1.3  
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    36   2.3  
UniRef50_P90493 Cluster: RS1 protein; n=1; Human herpesvirus 2|R...    34   7.0  

>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
           root|Rep: Putative uncharacterized protein - Salmonella
           typhimurium
          Length = 127

 Score = 46.8 bits (106), Expect = 0.001
 Identities = 23/40 (57%), Positives = 27/40 (67%)
 Frame = +3

Query: 621 PGXXIKKIDXQVXGGKTRXDXKNTRRFPLKAPWGPXLXQP 740
           P   I KID QV GG+TR D K+TRRFPL+AP    L +P
Sbjct: 22  PLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP 61



 Score = 37.5 bits (83), Expect = 0.75
 Identities = 21/60 (35%), Positives = 23/60 (38%)
 Frame = +1

Query: 703 P*KLPGAPXCXNPGRLXXTGXXFXLGEXVXLXIXXAXGFPXRXRXXAPXWXXXXNPPXNP 882
           P + P       P RL  T   F L E     I  A G   R R  AP W    NPP +P
Sbjct: 49  PLEAPSCALLFRPCRLPDTCPPFSLREAWRFLIAHAVGISVRCRSFAPSWAVCTNPPFSP 108


>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
           organisms|Rep: Predicted protein - Nematostella
           vectensis
          Length = 97

 Score = 41.9 bits (94), Expect = 0.035
 Identities = 19/32 (59%), Positives = 22/32 (68%)
 Frame = +3

Query: 621 PGXXIKKIDXQVXGGKTRXDXKNTRRFPLKAP 716
           P   I K D Q+ GG+TR D K+TRRFPL AP
Sbjct: 58  PLTSITKSDAQISGGETRQDYKDTRRFPLAAP 89


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 39.5 bits (88), Expect = 0.19
 Identities = 20/41 (48%), Positives = 24/41 (58%)
 Frame = +3

Query: 621 PGXXIKKIDXQVXGGKTRXDXKNTRRFPLKAPWGPXLXQPW 743
           P   I K D Q+ GG+TR D K+ RRFPL AP    L  P+
Sbjct: 90  PLTSIAKSDAQISGGETRQDYKDPRRFPLVAPSCALLFLPF 130


>UniRef50_UPI00015C63F8 Cluster: hypothetical protein
           CKO_pCKO3p06146; n=1; Citrobacter koseri ATCC
           BAA-895|Rep: hypothetical protein CKO_pCKO3p06146 -
           Citrobacter koseri ATCC BAA-895
          Length = 125

 Score = 36.7 bits (81), Expect = 1.3
 Identities = 24/66 (36%), Positives = 25/66 (37%)
 Frame = +1

Query: 685 KIPGVSP*KLPGAPXCXNPGRLXXTGXXFXLGEXVXLXIXXAXGFPXRXRXXAPXWXXXX 864
           KI  VS   LP A  C NP         F L   V L      G   R R  AP W    
Sbjct: 33  KIITVSDESLPLALSCSNPAVSRIPVPPFSLAGSVALSHSSHSGISARCRSFAPSWAVSK 92

Query: 865 NPPXNP 882
           NPP +P
Sbjct: 93  NPPFSP 98


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 35.9 bits (79), Expect = 2.3
 Identities = 15/24 (62%), Positives = 15/24 (62%)
 Frame = +3

Query: 369 AXMNRPTRGXRGXGXWAXFRFXPH 440
           A MNRPTRG R    WA FRF  H
Sbjct: 26  ALMNRPTRGERRFAYWALFRFLAH 49


>UniRef50_P90493 Cluster: RS1 protein; n=1; Human herpesvirus 2|Rep:
           RS1 protein - Human herpesvirus 2 (HHV-2) (Human herpes
           simplex virus 2)
          Length = 1318

 Score = 34.3 bits (75), Expect = 7.0
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -3

Query: 499 PPLGGXIPXXPTEXPXPPXPWGXKRKXAQXPXP 401
           PP G   P  PT  P PP P    R+ A+ P P
Sbjct: 824 PPAGAAPPAPPTPPPRPPRPAALTRRPAEGPDP 856


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 613,520,866
Number of Sequences: 1657284
Number of extensions: 8346238
Number of successful extensions: 17711
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17197
length of database: 575,637,011
effective HSP length: 103
effective length of database: 404,936,759
effective search space used: 133224193711
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)