Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_P17
(1217 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 32 0.19
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom... 29 0.99
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit... 27 4.0
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo... 26 9.2
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein... 26 9.2
SPAC664.08c |||traub transciption factor family protein |Schizos... 26 9.2
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 26 9.2
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 31.9 bits (69), Expect = 0.19
Identities = 31/137 (22%), Positives = 61/137 (44%)
Frame = +3
Query: 318 MPVMAKVCRLCETKDGPFLNIFESDKSTAKKIDELMPFGISENDELPHKICFRCSAKVEE 497
+PV + L E+ F+N+ S+ + KI L F ++ N CS + +
Sbjct: 3849 LPVCEQFINLAESVLDYFINVHNSNLDSLSKISTLF-FMVANNG--------FCSPDLPQ 3899
Query: 498 LHEFVQKCVKTQENLLAATGKKDLLNTKTKTREQWEEKLNKTNLSNDDICDALIRKAMEA 677
+ +++ L + G +D+ NT + + EE N+ + +N D + +E+
Sbjct: 3900 EGKSNSGELESGTGLGSGVGAEDITNTLNED-DDLEELANEEDTANQSDLDESEARELES 3958
Query: 678 IKDMPLNQSVVAEDKNS 728
+ SVV+E++NS
Sbjct: 3959 DMNGVTKDSVVSENENS 3975
>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 365
Score = 29.5 bits (63), Expect = 0.99
Identities = 21/100 (21%), Positives = 42/100 (42%)
Frame = +3
Query: 345 LCETKDGPFLNIFESDKSTAKKIDELMPFGISENDELPHKICFRCSAKVEELHEFVQKCV 524
L + + P E D +T K SE +++ H I F + V+ F+
Sbjct: 55 LSKVLNQPNFRFLEMDLATNYKFLYQFMVEDSEINKITHIINFAAESSVDR--SFIDPLY 112
Query: 525 KTQENLLAATGKKDLLNTKTKTREQWEEKLNKTNLSNDDI 644
T+ N+L+ + + +E+ +LN ++S D++
Sbjct: 113 FTKNNILSTQNLLECVRILLGKKEELRNRLNFVHVSTDEV 152
>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 27.5 bits (58), Expect = 4.0
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +3
Query: 276 KNVPNDLLVSAVSVMPVMAKVCRLCETKDGPFLNIFESDKSTAKKIDELM-PFGISENDE 452
+N PN++ ++V P+++K L E + L ES + K++++ P GI E+D+
Sbjct: 418 ENNPNNIPEGILNVFPILSKDSHLQENQPTDILT-DESVIAEDVKLEQVFKPVGIKESDK 476
Query: 453 L 455
+
Sbjct: 477 M 477
>SPBC244.02c |||U3 snoRNP-associated protein Utp6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 488
Score = 26.2 bits (55), Expect = 9.2
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 492 EELHEFVQKCVKTQENLLAAT-GKKDLLNTKTKTREQWEEKLNKTNLSNDD 641
E++ ++++ V E+LL +D +N KTR +EEKL + + +D
Sbjct: 3 EKVQYYMEQSVPELEDLLEKNIFNRDEINNIIKTRRVFEEKLARRQVKLND 53
>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 758
Score = 26.2 bits (55), Expect = 9.2
Identities = 23/130 (17%), Positives = 55/130 (42%), Gaps = 4/130 (3%)
Frame = +3
Query: 288 NDLLVSAVSVMPVMAKVCRLCETKDGPFLNIFESDKSTAKKIDELMPFGISENDELPHKI 467
N LL S + ++ ++ + D F +++ +DK +K PF S+ + + +
Sbjct: 48 NQLLRSIHIIQNLLNELDNYVDRSDCLFHSVWRTDKEKSKFSGNYYPFSPSKMNVITIDL 107
Query: 468 CFRCSAKVEE--LHEFVQKCVKTQENLLAATGKKDLLNTKTKTREQWEEKL--NKTNLSN 635
R S+ +E + + ++ ++ + K L + ++ + + L N
Sbjct: 108 SLRSSSTADEKLISQLGEEAHESLLKVHIEKANKHLFSLFSRVEDTSSKILITGDLNAGK 167
Query: 636 DDICDALIRK 665
+C+AL+ K
Sbjct: 168 STLCNALVHK 177
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 26.2 bits (55), Expect = 9.2
Identities = 28/98 (28%), Positives = 52/98 (53%), Gaps = 16/98 (16%)
Frame = +3
Query: 498 LHEFVQKCVKTQENLLAATGKKDLLNTKTKTREQ----WEEKLNKTNLS---NDDICDAL 656
L F+Q ++ ++NLL +G ++L++++K +E E L NL N+ D L
Sbjct: 212 LVSFIQHTLQLRKNLLIDSGV-EILDSRSKRKENPVSLEEIALEMNNLDDSLNEWKNDTL 270
Query: 657 IR-----KAMEAI----KDMPLNQSVVAEDKNSLLGRK 743
+ +A++ I K LNQS+V + +NS++ +K
Sbjct: 271 TKWHNRVQAVQGISQSNKFKALNQSIVQQIENSMINKK 308
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 26.2 bits (55), Expect = 9.2
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 267 GSTKNVPNDLLVSAVSVMPVMAKVCRLCETKD 362
G T NVP LL+ +V+ + A C++ + KD
Sbjct: 223 GDTSNVPQRLLLPSVNDPNIWAVRCKIGKEKD 254
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,122,884
Number of Sequences: 5004
Number of extensions: 79264
Number of successful extensions: 212
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 659412242
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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