Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_P17
(1217 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0863 + 32536695-32536906,32537832-32538216 31 1.8
08_02_0545 + 18470313-18470669,18470901-18471095,18471183-184713... 31 2.4
02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,278... 31 2.4
12_02_0795 + 23217463-23217684,23218296-23219155,23220001-232209... 30 3.2
10_01_0165 - 1869312-1869449,1870486-1872326,1872356-1872719 30 3.2
11_01_0485 + 3728686-3728863,3729933-3730095,3730508-3730549,373... 30 4.2
11_03_0021 + 9010846-9011672,9011753-9013700 29 5.6
05_02_0102 - 6616497-6616601,6616652-6617884 29 5.6
01_01_0472 - 3473096-3474288,3474833-3474938 29 5.6
>01_06_0863 + 32536695-32536906,32537832-32538216
Length = 198
Score = 31.1 bits (67), Expect = 1.8
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +3
Query: 474 RCSAKVEELHEFVQKCVKTQENLLAATGK-KDLLNTKTK-TREQWEEKLNKTNLS 632
RC + E FV+KC KT++ L G+ +L+ +KT+ T E +++ +LS
Sbjct: 43 RCHTEEVEPGRFVRKCEKTEQLLRDCVGRPSELVESKTENTEEDVTDEMKSGSLS 97
>08_02_0545 +
18470313-18470669,18470901-18471095,18471183-18471362,
18471462-18471656,18472081-18472179,18472271-18472780,
18472896-18473225
Length = 621
Score = 30.7 bits (66), Expect = 2.4
Identities = 23/102 (22%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Frame = +3
Query: 414 DELMPFGISENDELPHKICFRCSAKV--EELHEFVQKCVKTQENLLAATGKKD----LLN 575
D++ G+ ++ + R KV +++H + Q++L AAT +KD LN
Sbjct: 241 DQVKQIGVGIDEVKRDRQAVRDKIKVLEDQIHAVDGEIAALQDDLTAATARKDKAFEALN 300
Query: 576 TKTKTREQWEEKLNKTNLSNDDICDALIRKAMEAIKDMPLNQ 701
KTR+ ++ ++ + D R +EA++ + N+
Sbjct: 301 ELRKTRDLNNTSFHQYRTISNSVRDLSARGEVEAVQQLCQNE 342
>02_01_0385 +
2783387-2783695,2784149-2785082,2785206-2785309,
2785402-2785486,2785517-2787578,2787732-2787753,
2788157-2788327,2791473-2791517,2792558-2793874,
2793962-2794012,2794090-2794188,2794352-2794504,
2794554-2794571
Length = 1789
Score = 30.7 bits (66), Expect = 2.4
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +3
Query: 579 KTKTREQWEEKLNKTNLSNDDICDALIRKAMEAIKDMPLNQSVVAEDKNSLLG 737
K +TRE+W E N L D + +++ ++ PL Q V E N LLG
Sbjct: 387 KHRTREEWMEIKNSNILDTKDDEEGILKGFIQDTDGQPL-QKVAMEYVNELLG 438
>12_02_0795 +
23217463-23217684,23218296-23219155,23220001-23220929,
23221184-23221968
Length = 931
Score = 30.3 bits (65), Expect = 3.2
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 7/102 (6%)
Frame = +3
Query: 408 KIDELMPFGISENDELPHKICFR----CSAKVEEL-HEFVQKCVKTQENLLAATGKKDLL 572
++ E+MP I + L K F C +++E+ +E ++KC + LA LL
Sbjct: 411 RVFEIMPLSIDNSKSLFLKRIFGSKDVCIPQLDEVCYEILKKCGGSP---LAIITIASLL 467
Query: 573 NTKTKTREQWEEKLNK--TNLSNDDICDALIRKAMEAIKDMP 692
K T+E+WE N + L D + + R + D+P
Sbjct: 468 ANKANTKEEWERVRNSIGSTLQKDPDVEEMRRILSLSYDDLP 509
>10_01_0165 - 1869312-1869449,1870486-1872326,1872356-1872719
Length = 780
Score = 30.3 bits (65), Expect = 3.2
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Frame = +3
Query: 450 ELPHKICFRCSAKVEELHEFVQKCVKTQENL-LAATGKKDLLNTKTKTREQWEEKLNKTN 626
E+ F S K +E E ++K V+ + LAA +L +T T ++W++ L K+N
Sbjct: 317 EIIQSKAFSLSKKSDEHFEVLRKIVQRCDGSPLAAQSFGSVLFNRT-TLQEWKDILAKSN 375
Query: 627 LSN--DDICDALIRKAMEAIKDMPLN 698
+ N +DI ++R + + D+PL+
Sbjct: 376 ICNEGEDIIFPILRLSYD---DLPLH 398
>11_01_0485 +
3728686-3728863,3729933-3730095,3730508-3730549,
3730833-3730927,3731273-3731334,3731416-3731507,
3731587-3731722,3731818-3731904,3732430-3732519,
3732969-3733071,3733616-3733716,3733837-3733971,
3734006-3734093,3734484-3734544,3734626-3734689,
3735219-3735347
Length = 541
Score = 29.9 bits (64), Expect = 4.2
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -2
Query: 403 AVDLSDSKIFKKGPSFVSHNLHTFAMTGMTDTADTN 296
AVD+ GP H L+TF +TG+ D TN
Sbjct: 143 AVDIKPGSEIVSGPQKDGHLLYTFDITGLNDQDKTN 178
>11_03_0021 + 9010846-9011672,9011753-9013700
Length = 924
Score = 29.5 bits (63), Expect = 5.6
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +3
Query: 477 CSAKVEELHEFV-QKCVKTQENLLAATGKKDLLNTKTKTREQWEEKLNK--TNLSNDDIC 647
C + +EEL + + +KC LA LL TK+ T+E+WE LN + L N
Sbjct: 353 CPSHLEELSKAILRKCGGLP---LAILHIASLLATKSNTKEEWELVLNSIGSALENSHTL 409
Query: 648 DALIRKAMEAIKDMP 692
L + + + D+P
Sbjct: 410 QGLKKILLLSFYDLP 424
>05_02_0102 - 6616497-6616601,6616652-6617884
Length = 445
Score = 29.5 bits (63), Expect = 5.6
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +3
Query: 756 PQTNNILKLQAKTEDSNAAVNLKPVKL 836
P ++N +KL + + +NAA+N+KP L
Sbjct: 284 PASSNTMKLNEEEKPANAAMNMKPASL 310
>01_01_0472 - 3473096-3474288,3474833-3474938
Length = 432
Score = 29.5 bits (63), Expect = 5.6
Identities = 16/67 (23%), Positives = 36/67 (53%)
Frame = +3
Query: 591 REQWEEKLNKTNLSNDDICDALIRKAMEAIKDMPLNQSVVAEDKNSLLGRKVRAEPQTNN 770
R+Q+EEKL++++ D L + + +++ N SV AE + ++ +++ E +
Sbjct: 286 RQQYEEKLSRSDAEIDKCRQELADASEKLLQEKLSNSSVTAELQETIESIRIKLEEVSEE 345
Query: 771 ILKLQAK 791
L ++ K
Sbjct: 346 KLLVENK 352
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,071,130
Number of Sequences: 37544
Number of extensions: 441295
Number of successful extensions: 988
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3736328292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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