Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_P17
         (1217 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016669-2|AAB66099.2|  455|Caenorhabditis elegans Hypothetical ...    30   2.9  
U40160-3|AAA81157.2|  363|Caenorhabditis elegans Nuclear hormone...    29   6.7  
AC025716-1|AAK39606.1|  788|Caenorhabditis elegans Hypothetical ...    29   8.8  

>AF016669-2|AAB66099.2|  455|Caenorhabditis elegans Hypothetical
           protein K10G6.4 protein.
          Length = 455

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +3

Query: 462 KICFRCSAKVEELHEFVQKCVKTQENLLAATGKKDL 569
           K+C +   K+E+LH  ++KC + QE+L  A   + +
Sbjct: 306 KLCEQKDLKIEDLHSQLEKCDRLQESLEKADRSRQI 341


>U40160-3|AAA81157.2|  363|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 137, isoform a protein.
          Length = 363

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 402 AKKIDELMPFGISENDELPHKICFRCSAKVEELHEFVQK 518
           AKK+ +L  F  S+ +EL    CF  +  +E +  +  K
Sbjct: 178 AKKLPDLSKFSDSDKEELIRNSCFTIAIAIEAIESYFDK 216


>AC025716-1|AAK39606.1|  788|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.11 protein.
          Length = 788

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 25/107 (23%), Positives = 48/107 (44%)
 Frame = +3

Query: 531 QENLLAATGKKDLLNTKTKTREQWEEKLNKTNLSNDDICDALIRKAMEAIKDMPLNQSVV 710
           +EN+     K+D+LN    + + W E+L       + +  +     + A  D  + Q   
Sbjct: 168 RENVKLEAQKEDILNHTKNSEKMWNERLENITADFERLKSSSKPSGIRA--DQKMFQE-- 223

Query: 711 AEDKNSLLGRKVRAEPQTNNILKLQAKTEDSNAAVNLKPVKLTIEKC 851
            E K   L RK++      + L+   + ED+N+A+ +   +  +EKC
Sbjct: 224 NEMKIQELNRKLK------DALEAIEEIEDANSALRVDLERRGVEKC 264


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,730,456
Number of Sequences: 27780
Number of extensions: 440442
Number of successful extensions: 1255
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1255
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3359895476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)