Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_P15
         (1248 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa...    29   1.3  
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    27   4.1  
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    27   5.4  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    27   5.4  
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    27   7.2  

>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 394

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
 Frame = +3

Query: 456 IILQQGDELKNQGLVAYFKQLIHEPAKFIFLASNILVL-ACIPARLLKETN 605
           +IL + DEL NQG    FK+ I++  +++   + ++V+ A +P  +L+ TN
Sbjct: 167 LILDEADELLNQG----FKEQIYDIYRYLPPGTQVVVVSATLPQDVLEMTN 213


>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 326 NGEQEKMQHQYEETFEELRXE 264
           NGE E +QH+  E  E+LR E
Sbjct: 55  NGESEYLQHRISEFLEQLRTE 75


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = -2

Query: 719 YHTVDHCHEWTGQFHRASKKHQQKPRSRQQEKQYGFLH 606
           ++TVD  + W G + R  ++ +Q+ +   QE    ++H
Sbjct: 243 FYTVDQYNTWYGPYSRYLERREQRWKLFLQENGIDYIH 280


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -2

Query: 710 VDHCHEWTGQFHRASKKHQQKPRSRQQEKQYGFLHVGLLKESG 582
           +++C E    F+R +  ++ KP+     + Y F+  G L ESG
Sbjct: 703 MENCLELKSSFNRPNLFYEIKPKKDLYTELYRFISNGHLHESG 745


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 408 LSLASELGTILSTLCYIILQQGDELKNQGLVAYFKQLIH 524
           L L  E+   LS++ Y++  + D L   G  A   +++H
Sbjct: 201 LHLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILH 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,524,797
Number of Sequences: 5004
Number of extensions: 64688
Number of successful extensions: 158
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 679334062
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)