Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_P14
(1202 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S... 192 6e-50
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 192 6e-50
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 29 1.7
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 29 1.7
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 28 3.0
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 28 3.0
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 27 6.9
>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 192 bits (469), Expect = 6e-50
Identities = 91/178 (51%), Positives = 129/178 (72%)
Frame = +3
Query: 240 ASEGLKGSVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMV 419
A++ LKG + EVSLADLQ D E SFRK +L E +QG++ L +F+G D+T+DKLR +V
Sbjct: 57 ANDSLKGRILEVSLADLQKDE--EHSFRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRSLV 114
Query: 420 KKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITR 599
+KWQ+ IEAN +KTTDGY+ R+F IGFT++ +KT YAQ +Q+RAI +KM ++I
Sbjct: 115 RKWQSTIEANQTIKTTDGYLCRIFVIGFTSRRVNQVKKTTYAQSSQIRAIHQKMFQVIQN 174
Query: 600 DVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 773
++E+V KLIP+ I + IEKA + IYPL++V +RKVK+LK P+ + KL+ELH
Sbjct: 175 QANGCSMKELVQKLIPEVIGRAIEKATNNIYPLQNVFVRKVKILKAPKHDAQKLLELH 232
Score = 50.4 bits (115), Expect = 5e-07
Identities = 23/52 (44%), Positives = 31/52 (59%)
Frame = +2
Query: 107 KKVXSXXLVXPFTRKAWXAVKAPSLFSKRQVGTTLVNRTQGNXNCFGRIEGK 262
KK +V PF+RK W +KAP+ F + VG TLVNRT G N ++G+
Sbjct: 13 KKGIKKRVVDPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGR 64
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 192 bits (469), Expect = 6e-50
Identities = 90/178 (50%), Positives = 132/178 (74%)
Frame = +3
Query: 240 ASEGLKGSVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMV 419
A++ LKG + EVSLADLQ D E +FRK +L E +QG++ L +F+G+ +T+DKLR +V
Sbjct: 57 ANDSLKGRILEVSLADLQKDE--EHAFRKVKLRVEDIQGKSCLTSFNGLSITSDKLRSLV 114
Query: 420 KKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITR 599
+KWQT IEA+ +KTTDGY+ RVF IGFT + + +KT YAQ +Q+RAIR+KM ++I
Sbjct: 115 RKWQTTIEADQTIKTTDGYLCRVFVIGFTRRRANQVKKTTYAQSSQIRAIRQKMFQVIQN 174
Query: 600 DVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 773
++ +RE+V KLIP+ I ++IE+A I+PL++V +RKVK+LK P+ + KL+ELH
Sbjct: 175 QTSSCSMRELVQKLIPEVIGREIERATGSIFPLQNVLVRKVKILKAPKHDAQKLLELH 232
Score = 50.8 bits (116), Expect = 4e-07
Identities = 23/52 (44%), Positives = 31/52 (59%)
Frame = +2
Query: 107 KKVXSXXLVXPFTRKAWXAVKAPSLFSKRQVGTTLVNRTQGNXNCFGRIEGK 262
KK +V PF+RK W +KAP+ F + VG TLVNRT G N ++G+
Sbjct: 13 KKGIKKRVVDPFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGR 64
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 28.7 bits (61), Expect = 1.7
Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Frame = +3
Query: 255 KGSVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQT 434
KG+ +V++ L+ DAE + + F I EY++ N D T K + +W +
Sbjct: 97 KGAAADVNI--LKRTKDAEENKKLFEKIIEYIRATNKKVGVFPKDKTQGK---FINEWDS 151
Query: 435 LIE-ANIDVKTTDGYVLRVFCIGFTNKDSLSQRK 533
+ E + D + C+ ++ L+ K
Sbjct: 152 IFEPVKSEFNLVDASLGLAKCLAIKDEQELANIK 185
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 28.7 bits (61), Expect = 1.7
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +3
Query: 264 VFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMV--KKWQTL 437
VF+V + + D R+ + +A Q R V C H MDL + LR +V ++ L
Sbjct: 86 VFDVESREFERDLVTFRNCLE-ATVANSPQAR-VFCLIHKMDLVQEDLRDLVFEERKAIL 143
Query: 438 IEANIDVKTT 467
+E + D++TT
Sbjct: 144 LETSKDLETT 153
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 27.9 bits (59), Expect = 3.0
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = -3
Query: 765 PSTSRSRNGASSTLSPFGCKHRAE 694
PSTSR RN S LS KHRA+
Sbjct: 736 PSTSRERNNNISELSNSRTKHRAK 759
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 27.9 bits (59), Expect = 3.0
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +3
Query: 585 EIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIR 716
E + D +R++ ++ + +A ++ C GI +R+VC R
Sbjct: 387 EFVPPDALEPLVRKIADEFVTSGVANEV--VCAGINAIREVCAR 428
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 26.6 bits (56), Expect = 6.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 431 LPFFNHPPELIGCEVHAVEVAEHITS 354
L H PEL+ C +VA+H+TS
Sbjct: 181 LQSMGHSPELVQCITCLPDVADHLTS 206
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,526,546
Number of Sequences: 5004
Number of extensions: 67504
Number of successful extensions: 192
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 649451332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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