Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_P14
         (1202 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524...   231   8e-61
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120...   229   3e-60
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221...   229   3e-60
11_01_0558 - 4396750-4396986,4397699-4398050,4398266-4398504,439...    29   7.3  

>03_02_0043 +
           5242496-5242554,5242673-5242778,5243586-5243723,
           5243794-5243979,5244075-5244275,5244362-5244460
          Length = 262

 Score =  231 bits (565), Expect = 8e-61
 Identities = 123/238 (51%), Positives = 169/238 (71%), Gaps = 2/238 (0%)
 Frame = +3

Query: 66  MAVGQNQGLVEGR--SKRCXVXXLSXHSLAKLGXLSRLRLCSASGKSAPRLSTVPRVTXI 239
           MAVG+N+ + +G+  SK+  V   +      +   S   + +  GK+   L +  + T I
Sbjct: 1   MAVGKNKRISKGKKGSKKKTVDPFAKKDWYDIKAPSVFNVRNI-GKT---LVSRTQGTKI 56

Query: 240 ASEGLKGSVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMV 419
           ASEGLK  VFEVSLADLQ D D  +++RK RL AE VQG+NVL NF GM  TTDKLR +V
Sbjct: 57  ASEGLKHRVFEVSLADLQNDED--QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLV 114

Query: 420 KKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITR 599
           KKWQTLIEA++DVKTTDGY+LR+FCIGFT +     ++TCYAQ +Q+R IR+KM EI+  
Sbjct: 115 KKWQTLIEAHVDVKTTDGYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMAN 174

Query: 600 DVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 773
             ++ +L+E+V+K IP+ I K+IEKA   I+PL++V +RKVK+LK P+F++ KLME+H
Sbjct: 175 QASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVH 232


>12_02_0012 -
           12309332-12310228,12311087-12311669,12311945-12312051,
           12313190-12313237,12315139-12315216,12315300-12315500,
           12315612-12315797,12315870-12316007,12318311-12318416,
           12318529-12318587
          Length = 800

 Score =  229 bits (560), Expect = 3e-60
 Identities = 122/238 (51%), Positives = 168/238 (70%), Gaps = 2/238 (0%)
 Frame = +3

Query: 66  MAVGQNQGLVEGR--SKRCXVXXLSXHSLAKLGXLSRLRLCSASGKSAPRLSTVPRVTXI 239
           MAVG+N+ + +G+  SK+  V   +      +   S   + +  GK+   L +  + T I
Sbjct: 1   MAVGKNKRISKGKKGSKKKTVDPFAKKDWYDIKAPSVFNVRNV-GKT---LVSRTQGTKI 56

Query: 240 ASEGLKGSVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMV 419
           ASEGLK  VFEVSLADLQ D D  +++RK RL AE VQG+NVL NF GM  TTDKLR +V
Sbjct: 57  ASEGLKHRVFEVSLADLQNDED--QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLV 114

Query: 420 KKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITR 599
           KKWQTLIEA++DVKTTD Y+LR+FCIGFT +     ++TCYAQ +Q+R IR+KM EI+  
Sbjct: 115 KKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVN 174

Query: 600 DVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 773
             ++ +L+E+V+K IP+ I K+IEKA   I+PL++V +RKVK+LK P+F++ KLME+H
Sbjct: 175 QASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVH 232


>02_02_0482 -
           10819562-10819813,10820773-10820952,10822073-10822150,
           10823056-10823256,10823365-10823550,10823646-10823783,
           10824396-10824501,10824634-10824692
          Length = 399

 Score =  229 bits (560), Expect = 3e-60
 Identities = 124/238 (52%), Positives = 167/238 (70%), Gaps = 2/238 (0%)
 Frame = +3

Query: 66  MAVGQNQGLVEGR--SKRCXVXXLSXHSLAKLGXLSRLRLCSASGKSAPRLSTVPRVTXI 239
           MAVG+N+ + +GR  SK+  V   S      +   +   + +  GK+   L +  + T I
Sbjct: 1   MAVGKNKRISKGRKGSKKKTVDPFSKKDWYDIKAPTVFSVRNI-GKT---LVSRTQGTKI 56

Query: 240 ASEGLKGSVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMV 419
           ASEGLK  VFEVSLADLQ D D  +++RK RL AE VQGRNVL NF GM  TTDKLR +V
Sbjct: 57  ASEGLKHRVFEVSLADLQNDED--QAYRKVRLRAEDVQGRNVLTNFWGMSFTTDKLRSLV 114

Query: 420 KKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITR 599
           KKWQTLIEA++DVKTTD Y+LR+FCIGFT +     ++TCYAQ +Q+R IR+KM EI+  
Sbjct: 115 KKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMAN 174

Query: 600 DVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 773
             +  +L+E+V+K IP+ I K+IEK+   I+PL++V IRKVK+LK P+F++ KLME+H
Sbjct: 175 QASTCDLKELVSKFIPEVIGKEIEKSTSSIFPLQNVFIRKVKILKAPKFDLGKLMEVH 232


>11_01_0558 -
           4396750-4396986,4397699-4398050,4398266-4398504,
           4398608-4398709
          Length = 309

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 624 EVVNKLIPDSIAKDIEKACHGIYPLRD 704
           ++VN  IPD + + ++K C  IY LR+
Sbjct: 34  QLVNTGIPDDLLERVKKVCSDIYKLRE 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,932,229
Number of Sequences: 37544
Number of extensions: 493765
Number of successful extensions: 1451
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1445
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3678130032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)