Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_P13
         (1208 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0107 + 14504065-14504448,14504545-14504922,14506011-145066...    34   0.26 
11_01_0467 + 3621266-3621401,3621531-3622699,3622815-3623128,362...    29   5.5  

>03_03_0107 +
           14504065-14504448,14504545-14504922,14506011-14506619,
           14507110-14507237,14507829-14507832
          Length = 500

 Score = 33.9 bits (74), Expect = 0.26
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +3

Query: 111 HFSSQNGLLPSPALRFLXPLGC---GWSXLPHLRTXRPKQRAXSSGVNXNSS 257
           HFSS +G LP    R +  LG    G++ L HLR  RP   A +S    N +
Sbjct: 68  HFSSASGPLPDHVRREILELGLPDDGYNYLHHLRELRPSAAAAASSFAPNQT 119


>11_01_0467 +
           3621266-3621401,3621531-3622699,3622815-3623128,
           3623276-3623937,3624040-3624401
          Length = 880

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 13/49 (26%), Positives = 28/49 (57%)
 Frame = -1

Query: 614 KNWPQIQINGAS*SIQLYSS*NYRGKLKYGIIIYYNMFWGLNLKSICIY 468
           + +P++  N  + + + +S  N  GK +YG +   N+F G N+ +I ++
Sbjct: 556 RKFPKVPYNELAEATEGFSESNLIGKGRYGYVYRGNLFQGTNVVAIKVF 604


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,926,571
Number of Sequences: 37544
Number of extensions: 361628
Number of successful extensions: 483
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3701409336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)