Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_P13
         (1208 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    26   0.58 
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    25   1.8  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   4.1  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   7.1  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   7.1  

>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 26.2 bits (55), Expect = 0.58
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 879 NRNNLFNSTYNXYNTVLFY 823
           N NN  N+ YN YN  L+Y
Sbjct: 329 NYNNYNNNNYNNYNKKLYY 347


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 879 NRNNLFNSTYNXYNTVLFY 823
           N NN +N+ YN YN  L+Y
Sbjct: 93  NYNN-YNNNYNNYNKKLYY 110


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 879 NRNNLFNSTYNXYNTVLFY 823
           N NN +N   N YN  L+Y
Sbjct: 99  NYNNKYNYNNNNYNKKLYY 117


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 879 NRNNLFNSTYNXYN 838
           N NN  N+ YN YN
Sbjct: 92  NNNNYNNNNYNNYN 105


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 873 NNLFNSTYNXYNTVLFY 823
           NN +   YN YN  L+Y
Sbjct: 326 NNNYKYNYNNYNKKLYY 342


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,620
Number of Sequences: 438
Number of extensions: 4722
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 41331843
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)