Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_P12
         (1236 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0I6R0 Cluster: Putative uncharacterized protein; n=1; ...    40   0.17 
UniRef50_Q72MW5 Cluster: Acriflavin resistance; n=2; Leptospira ...    35   3.8  
UniRef50_Q0P966 Cluster: Bipartate energy taxis response protein...    35   5.0  

>UniRef50_Q0I6R0 Cluster: Putative uncharacterized protein; n=1;
           Synechococcus sp. CC9311|Rep: Putative uncharacterized
           protein - Synechococcus sp. (strain CC9311)
          Length = 391

 Score = 39.5 bits (88), Expect = 0.17
 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
 Frame = +1

Query: 406 PIDEPLYDLGPHTSSI--PVQETYSQNFEFGGYIDQVERTYEALRGVDPRLDRRMPFSMF 579
           PI   LY   P   ++  P   T S       Y++Q+  ++  L+ +DP+L       +F
Sbjct: 16  PIKSGLYTSLPCQENVSGPCDGTQSYAHHLKAYLNQLSDSF--LKNIDPQLSELYKLHLF 73

Query: 580 QHSMCTVLNAY-IIDLTLDNGERKMDS 657
            H+ CT    + ++D    NG R+ DS
Sbjct: 74  DHTRCTHFARFVVVDQLFYNGRRRNDS 100


>UniRef50_Q72MW5 Cluster: Acriflavin resistance; n=2; Leptospira
            interrogans|Rep: Acriflavin resistance - Leptospira
            interrogans serogroup Icterohaemorrhagiae
            serovarcopenhageni
          Length = 1083

 Score = 35.1 bits (77), Expect = 3.8
 Identities = 21/53 (39%), Positives = 30/53 (56%)
 Frame = -1

Query: 528  SLIGALHLINIATKLKVLRVSFLNRDRASMGSQVVERFINWGRFLLRSKIVRS 370
            S+IG + LI +ATK  +L V F N+   S G ++ E  I  GR  LR  ++ S
Sbjct: 966  SMIGLIMLIGVATKNSILLVDFTNQ-LLSQGKEMKEAIIEAGRERLRPILMTS 1017


>UniRef50_Q0P966 Cluster: Bipartate energy taxis response protein
           cetA precursor; n=12; Campylobacter|Rep: Bipartate
           energy taxis response protein cetA precursor -
           Campylobacter jejuni
          Length = 459

 Score = 34.7 bits (76), Expect = 5.0
 Identities = 16/54 (29%), Positives = 32/54 (59%)
 Frame = +1

Query: 601 LNAYIIDLTLDNGERKMDSARCQDLLPEDLCLPENLYHYITSIGNTTTVNGEEI 762
           L+  ++DL+L  G +  D ++    L +D+ + +N+Y  + +I +T T NG E+
Sbjct: 154 LSRTLMDLSL--GNQNKDMSQISSSLNQDISMMKNVYDTVDAISHTATENGSEV 205


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 901,770,713
Number of Sequences: 1657284
Number of extensions: 16674557
Number of successful extensions: 42374
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 40433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42354
length of database: 575,637,011
effective HSP length: 103
effective length of database: 404,936,759
effective search space used: 124720521772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)