Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_P12
         (1236 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase Agn1|Schizo...    31   0.44 
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    28   3.1  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    27   5.4  

>SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase
           Agn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 30.7 bits (66), Expect = 0.44
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +1

Query: 805 GDIPAGTFGAIDALNHNVYECYISPYVTXXRV 900
           G +PAG+ G +D  +H  +   +SPY++  ++
Sbjct: 271 GALPAGSEGYVDGFDHTAWRYLMSPYISAYKL 302


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +1

Query: 667 QDLLPEDLCLPENLYHYITSIG-NTTTVNGEEIKFNL--PDAAIPQAADGDIPAG 822
           +DL PE+L L +NL   I   G +    +G  +K +   P+ A P+  +G + AG
Sbjct: 155 RDLKPENLLLDDNLNVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVINGKLYAG 209


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 161 IPLVVCRKAAGTLAVPXRSSSAKLSVXP 244
           +P  +C  ++ +L+V  RS+SAKL   P
Sbjct: 751 LPCYICESSSDSLSVISRSNSAKLPYVP 778


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,601,962
Number of Sequences: 5004
Number of extensions: 66212
Number of successful extensions: 146
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 671365334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)