Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_P12
         (1236 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99267-1|CAB16465.1|  732|Caenorhabditis elegans C33A12.12 protein.    29   6.8  
Z68493-14|CAA92801.1|  732|Caenorhabditis elegans Hypothetical p...    29   6.8  
AL033537-1|CAA22147.1|  732|Caenorhabditis elegans Hypothetical ...    29   6.8  
Z69664-5|CAE17882.2|  360|Caenorhabditis elegans Hypothetical pr...    29   9.0  

>Z99267-1|CAB16465.1|  732|Caenorhabditis elegans C33A12.12 protein.
          Length = 732

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = -1

Query: 486 LKVLRVSFLNRDRASMGSQVVERFINWGRFLLRSKIVRSSG 364
           LK LRV  ++RD   + +Q++E+++  G  L + K +  SG
Sbjct: 223 LKDLRVLDISRDWDILNTQIIEQYLECGMVLPKLKFLDCSG 263


>Z68493-14|CAA92801.1|  732|Caenorhabditis elegans Hypothetical
           protein C33A12.12 protein.
          Length = 732

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = -1

Query: 486 LKVLRVSFLNRDRASMGSQVVERFINWGRFLLRSKIVRSSG 364
           LK LRV  ++RD   + +Q++E+++  G  L + K +  SG
Sbjct: 223 LKDLRVLDISRDWDILNTQIIEQYLECGMVLPKLKFLDCSG 263


>AL033537-1|CAA22147.1|  732|Caenorhabditis elegans Hypothetical
           protein C33A12.12 protein.
          Length = 732

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = -1

Query: 486 LKVLRVSFLNRDRASMGSQVVERFINWGRFLLRSKIVRSSG 364
           LK LRV  ++RD   + +Q++E+++  G  L + K +  SG
Sbjct: 223 LKDLRVLDISRDWDILNTQIIEQYLECGMVLPKLKFLDCSG 263


>Z69664-5|CAE17882.2|  360|Caenorhabditis elegans Hypothetical
           protein K04D7.6 protein.
          Length = 360

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +2

Query: 551 WIGVCPSVCSNIRCVLFLMHTSSI*L*IMVRERWIQRDARTFY 679
           W+ V  SV ++    L+L  TSS+ L + +RE+ ++     FY
Sbjct: 101 WLFVASSVETSFHYTLYLQFTSSVLLYVFLREKDLKSSWTLFY 143


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,104,908
Number of Sequences: 27780
Number of extensions: 389293
Number of successful extensions: 981
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3422502224
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)