Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_P09
         (1230 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    24   2.0  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    24   2.7  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    23   6.2  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 24.2 bits (50), Expect = 2.0
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -3

Query: 853 KNRVRRDVQTHQKWNENCDLL*SPQRSR-RYCIRIKALNQCLK 728
           K  VR+D+    +  +NC ++   QR+R +YC   K LN  +K
Sbjct: 111 KRTVRKDLSYACREEKNC-IIDKRQRNRCQYCRYQKCLNMGMK 152


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 23.8 bits (49), Expect = 2.7
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = -2

Query: 311 HLIFDYVTLILFIGFNYCFSVFVKRYPYYH*V-HIXXXXKTFKNV--CY 174
           HLI   V +  ++ F+YC  + V+R+  Y  + H      T  NV  CY
Sbjct: 491 HLIVRSVFVTTYLMFDYCTVLRVQRFNNYQSLAHYLRVFFTVFNVVHCY 539


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 22.6 bits (46), Expect = 6.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 178 HTFLNVFFFFHIC 216
           + F ++FFFF IC
Sbjct: 69  YAFTHIFFFFAIC 81


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,695
Number of Sequences: 336
Number of extensions: 4492
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 35966350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)