Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_P07
         (1346 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.5  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   5.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 16/56 (28%), Positives = 17/56 (30%)
 Frame = -3

Query: 609 PXGXXAPTPXXYXPGPXPXLXLTSPXPPXPPXPPXPXXRAXGGXXXXXXXXPPPXP 442
           P     P P    P P P     +   P PP PP P   A G           P P
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803



 Score = 27.1 bits (57), Expect = 5.9
 Identities = 15/44 (34%), Positives = 16/44 (36%)
 Frame = -2

Query: 541 QPLPPXAPXPPXPXXAXPGGXXXXXXPXPXPXPXXXGPXXKXPP 410
           Q L   +P PP P    P        P P P P   GP    PP
Sbjct: 725 QKLLLKSPPPPPPAVIVPT-PAPAPIPVPPPAPIMGGPPPPPPP 767



 Score = 27.1 bits (57), Expect = 5.9
 Identities = 18/53 (33%), Positives = 18/53 (33%), Gaps = 3/53 (5%)
 Frame = -3

Query: 591 PTPXXYXPGPXPXLXLTSPXPP---XPPXPPXPXXRAXGGXXXXXXXXPPPXP 442
           P P    P P P      P  P    PP PP P   A  G        PPP P
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAG----PPPPPPPPP 783


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 15/45 (33%), Positives = 16/45 (35%)
 Frame = -2

Query: 547  PXQPLPPXAPXPPXPXXAXPGGXXXXXXPXPXPXPXXXGPXXKXP 413
            P  P+P  AP  P P  A P        P P P P    P    P
Sbjct: 1131 PPVPVPSGAPPVPKPSVAAPPVPAPSGAP-PVPKPSVAAPPVPAP 1174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,505,105
Number of Sequences: 5004
Number of extensions: 15614
Number of successful extensions: 130
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 741217394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)