Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_P06
         (1230 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    25   0.88 
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    25   0.88 
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    25   0.88 
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    25   0.88 
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    25   0.88 
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           25   0.88 
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    25   0.88 
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    24   2.7  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    22   8.2  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    22   8.2  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 0.88
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 237 MDKSRLRQSTVHSNEIGERQRSQRTGYES 323
           M +  L QSTV++N   +RQR+  T Y++
Sbjct: 204 MKRVHLGQSTVNANGETKRQRTSYTRYQT 232


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 0.88
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 237 MDKSRLRQSTVHSNEIGERQRSQRTGYES 323
           M +  L QSTV++N   +RQR+  T Y++
Sbjct: 204 MKRVHLGQSTVNANGETKRQRTSYTRYQT 232


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 0.88
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 237 MDKSRLRQSTVHSNEIGERQRSQRTGYES 323
           M +  L QSTV++N   +RQR+  T Y++
Sbjct: 204 MKRVHLGQSTVNANGETKRQRTSYTRYQT 232


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 25.4 bits (53), Expect = 0.88
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 237 MDKSRLRQSTVHSNEIGERQRSQRTGYES 323
           M +  L QSTV++N   +RQR+  T Y++
Sbjct: 204 MKRVHLGQSTVNANGETKRQRTSYTRYQT 232


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 25.4 bits (53), Expect = 0.88
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 237 MDKSRLRQSTVHSNEIGERQRSQRTGYES 323
           M +  L QSTV++N   +RQR+  T Y++
Sbjct: 160 MKRVHLGQSTVNANGETKRQRTSYTRYQT 188


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 0.88
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 237 MDKSRLRQSTVHSNEIGERQRSQRTGYES 323
           M +  L QSTV++N   +RQR+  T Y++
Sbjct: 204 MKRVHLGQSTVNANGETKRQRTSYTRYQT 232


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 0.88
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 237 MDKSRLRQSTVHSNEIGERQRSQRTGYES 323
           M +  L QSTV++N   +RQR+  T Y++
Sbjct: 204 MKRVHLGQSTVNANGETKRQRTSYTRYQT 232


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 23.8 bits (49), Expect = 2.7
 Identities = 15/47 (31%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
 Frame = -2

Query: 491 LSRHETASSSHRVANVLAVP---AASKAHTGPAGGATHRPAHSGGGT 360
           L  H  A +  R    + VP      +   GPA    H PAH   GT
Sbjct: 303 LHDHRPALAQQRRVAAVQVPQLAGGGRRGPGPARSRRHLPAHLVAGT 349


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 22.2 bits (45), Expect = 8.2
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 228 SDCMDKSRLRQSTVHSNEIGERQRSQRTGYES 323
           SDC       Q+  H+NE+  R + +   YES
Sbjct: 27  SDCDKNQNTEQNYTHNNEMYHRVKEEPI-YES 57


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 22.2 bits (45), Expect = 8.2
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 228 SDCMDKSRLRQSTVHSNEIGERQRSQRTGYES 323
           SDC       Q+  H+NE+  R + +   YES
Sbjct: 27  SDCDKNQNTEQNYTHNNEMYHRVKEEPI-YES 57


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,206
Number of Sequences: 336
Number of extensions: 5566
Number of successful extensions: 18
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 35966350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)