Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_P05
(1267 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 36 0.009
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 33 0.063
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 32 0.15
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 31 0.26
SPAC144.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 31 0.34
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 30 0.59
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 29 1.4
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 29 1.8
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 28 2.4
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 27 7.3
SPACUNK4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 7.3
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 26 9.6
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 36.3 bits (80), Expect = 0.009
Identities = 23/73 (31%), Positives = 30/73 (41%)
Frame = +1
Query: 265 KKKKXXKKKXXXXXKKKXXXEKKKXXKXXKKXKKKKKIXKXFXFLKKKKXXKKTXKKKXK 444
K +K K+ K K EKK+ KK K+ K+ +K+K K KK K
Sbjct: 129 KVRKTSGKESSKREKSKKKKEKKEKKDKLKKKSKRLKLDDSHTQKRKRKVRDKESKKSSK 188
Query: 445 KXKKKKXXKKKXK 483
KK KK K
Sbjct: 189 SGLKKVSGTKKVK 201
Score = 26.6 bits (56), Expect = 7.3
Identities = 25/85 (29%), Positives = 32/85 (37%)
Frame = +1
Query: 310 KKXXXEKKKXXKXXKKXKKKKKIXKXFXFLKKKKXXKKTXKKKXKKXKKKKXXKKKXKKX 489
KK K + K+ K KKK K+KK K KKK K+ K +K K+
Sbjct: 126 KKVKVRKTSGKESSKREKSKKK--------KEKKEKKDKLKKKSKRLKLDDSHTQKRKR- 176
Query: 490 XXKXXXRXXXXXGGKXKKKXXGGKK 564
K + KK G KK
Sbjct: 177 --KVRDKESKKSSKSGLKKVSGTKK 199
Score = 26.2 bits (55), Expect = 9.6
Identities = 16/53 (30%), Positives = 20/53 (37%)
Frame = +1
Query: 217 KXXKKXXKKXXKKXXXKKKKXXKKKXXXXXKKKXXXEKKKXXKXXKKXKKKKK 375
K K K KK +KK KKK +K+K K+ KK K
Sbjct: 136 KESSKREKSKKKKEKKEKKDKLKKKSKRLKLDDSHTQKRKRKVRDKESKKSSK 188
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 33.5 bits (73), Expect = 0.063
Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Frame = +1
Query: 253 KXXXKKKKXXKKKXXXXXKKKXXXEKKKXXKXXKKXKKK-KKIXKXFXFLKKKKXXKKTX 429
K +KK KKK + KK K KK KK+ KK K K+K
Sbjct: 164 KREKRKKHSSKKKSKKKTSTGSALDPKKLEKITKKKKKEHKKKDKESSSKKRKSGSSDKE 223
Query: 430 KKKXKKXKKK 459
+KK KK K K
Sbjct: 224 EKKKKKIKLK 233
Score = 32.3 bits (70), Expect = 0.15
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +1
Query: 325 EKKKXXKXXKKXKKKKKIXKXFXFLKKKKXXKKTXKKKXKKXKKKKXXKKK 477
EK+K KK KKK K +K KK K+ KK K+ K+K
Sbjct: 166 EKRKKHSSKKKSKKKTSTGSALDPKKLEKITKKKKKEHKKKDKESSSKKRK 216
Score = 31.5 bits (68), Expect = 0.26
Identities = 20/54 (37%), Positives = 25/54 (46%)
Frame = +1
Query: 325 EKKKXXKXXKKXKKKKKIXKXFXFLKKKKXXKKTXKKKXKKXKKKKXXKKKXKK 486
+++K K K K KKK L KK K T KKK + KK K K +K
Sbjct: 164 KREKRKKHSSKKKSKKKTSTG-SALDPKKLEKITKKKKKEHKKKDKESSSKKRK 216
Score = 28.7 bits (61), Expect = 1.8
Identities = 24/82 (29%), Positives = 28/82 (34%)
Frame = +1
Query: 217 KXXKKXXKKXXKKXXXKKKKXXKKKXXXXXKKKXXXEKKKXXKXXKKXKKKKKIXKXFXF 396
K K KK KK KK KKK KKK + K +K K
Sbjct: 167 KRKKHSSKKKSKKKTSTGSALDPKKLEKITKKKKKEHKKKDKESSSKKRKSGSSDKEEK- 225
Query: 397 LKKKKXXKKTXKKKXKKXKKKK 462
KKKK K + +K K
Sbjct: 226 -KKKKIKLKDKPESTSSVEKVK 246
Score = 27.9 bits (59), Expect = 3.1
Identities = 22/66 (33%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Frame = +1
Query: 355 KXKKKKKIXKXFXFLKKKKXXKKTXKKKXKK--XKKKKXXKKKXKKXXXKXXXRXXXXXG 528
K +K+KK KK KK +K KKKK KKK K+ K
Sbjct: 164 KREKRKKHSSKKKSKKKTSTGSALDPKKLEKITKKKKKEHKKKDKESSSKKRKSGSSDKE 223
Query: 529 GKXKKK 546
K KKK
Sbjct: 224 EKKKKK 229
Score = 26.2 bits (55), Expect = 9.6
Identities = 23/84 (27%), Positives = 29/84 (34%)
Frame = +1
Query: 226 KKXXKKXXKKXXXKKKKXXKKKXXXXXKKKXXXEKKKXXKXXKKXKKKKKIXKXFXFLKK 405
++ KK K KKK +K +KKK K K KK ++
Sbjct: 165 REKRKKHSSKKKSKKKTSTGSALDPKKLEKITKKKKKEHKKKDKESSSKKRKSGSSDKEE 224
Query: 406 KKXXKKTXKKKXKKXKKKKXXKKK 477
KK KK K K K K K
Sbjct: 225 KK--KKKIKLKDKPESTSSVEKVK 246
Score = 23.4 bits (48), Expect(2) = 5.8
Identities = 14/40 (35%), Positives = 16/40 (40%)
Frame = +3
Query: 216 KKXXKXXKKXXKKXXXXKKKIXKKKKXXXXKKKKXXGKKK 335
K+ KK KK + KK KKKK KKK
Sbjct: 167 KRKKHSSKKKSKKKTSTGSALDPKKLEKITKKKKKEHKKK 206
Score = 21.8 bits (44), Expect(2) = 5.8
Identities = 14/49 (28%), Positives = 18/49 (36%)
Frame = +3
Query: 450 KEKKXXKKKXKKXXXKXXXAXXXXXXXEXKKKXXXXKKKXKKKXXXKKK 596
K+KK KKK K+ K + + KKK K K K
Sbjct: 198 KKKKEHKKKDKESSSKKRKSGSSDKEEKKKKKIKLKDKPESTSSVEKVK 246
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 32.3 bits (70), Expect = 0.15
Identities = 24/75 (32%), Positives = 36/75 (48%)
Frame = +1
Query: 253 KXXXKKKKXXKKKXXXXXKKKXXXEKKKXXKXXKKXKKKKKIXKXFXFLKKKKXXKKTXK 432
K ++K+ KKK K++ EKK ++ ++ LKK++ KK+
Sbjct: 170 KKSIRRKEKEKKKSSDAWKERKDNEKKAMLMRQQRREEN---------LKKRRESKKS-- 218
Query: 433 KKXKKXKKKKXXKKK 477
KK K KKKK KKK
Sbjct: 219 KKGKAPKKKKPSKKK 233
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 31.5 bits (68), Expect = 0.26
Identities = 19/53 (35%), Positives = 20/53 (37%)
Frame = -2
Query: 486 FFXFFFXXFFFLXFFXFFFXXFFXXFFFF*EXKXFXNFFFFFXFFXXFXXFFF 328
FF FF F F F FF F +F F FFFF F F F
Sbjct: 121 FFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHF--LFFFFLCVCVFLSFLF 171
Score = 27.9 bits (59), Expect = 3.1
Identities = 17/53 (32%), Positives = 18/53 (33%)
Frame = -2
Query: 375 FFFFFXFFXXFXXFFFFPXXFFFXXXXXFFFXXFFFFXXXFFXXFFXXFFXXF 217
FFFF FF F F F FF +F F FF F F
Sbjct: 119 FFFFLLFFLSFS--FSFSFLFFLSQIFIVYFSSFPILHFLFFFFLCVCVFLSF 169
>SPAC144.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 112
Score = 31.1 bits (67), Expect = 0.34
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = +1
Query: 307 KKKXXXEKKKXXKXXKKXKKKKKIXKXFXFLKKKKXXKKTXKKKXKKXKKKKXXKKKXKK 486
KK+ E KK + ++ K+KKK + +LKK + +K + +K+ KK+ +K
Sbjct: 35 KKERPFEPKKLVQQQQRLKEKKK-NENIIYLKKTMRVTPSEEKIHEMINQKRETKKRKRK 93
Query: 487 XXXK 498
K
Sbjct: 94 QKKK 97
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 30.3 bits (65), Expect = 0.59
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +1
Query: 265 KKKKXXKKKXXXXXKKKXXXEKKKXXKXXKKXKKKKKIXKXFXFLKKKKXXKKT 426
KKKK K + +K+K K KK K+K + + KKKK KK+
Sbjct: 453 KKKKKSSKLKEADGESSKKEKKEKKDKKHKKSKRKSEESEDGESPKKKKKSKKS 506
Score = 27.9 bits (59), Expect = 3.1
Identities = 21/63 (33%), Positives = 25/63 (39%)
Frame = +1
Query: 283 KKKXXXXXKKKXXXEKKKXXKXXKKXKKKKKIXKXFXFLKKKKXXKKTXKKKXKKXKKKK 462
KKK K+ E K K KK KK KK K+K + + KK KK K
Sbjct: 453 KKKKKSSKLKEADGESSKKEKKEKKDKKHKK--------SKRKSEESEDGESPKKKKKSK 504
Query: 463 XXK 471
K
Sbjct: 505 KSK 507
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 29.1 bits (62), Expect = 1.4
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +1
Query: 217 KXXKKXXKKXXKKXXXKKKKXXKKKXXXXXKKKXXXEKKKXXKXXKKXKKKKK 375
K K + KK K+KK +K+ KK ++ K KK K K+K
Sbjct: 702 KQASKASEAKDKKSLAKRKKQMEKEEVPRAYKKTKNDRLSNKKSTKKSKSKRK 754
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 28.7 bits (61), Expect = 1.8
Identities = 19/72 (26%), Positives = 21/72 (29%)
Frame = -3
Query: 497 FXXXFFXFFFXXFFFFXFLXFFFXVFXXXFFFFKXKKXFXIXXXXXXXXXXFXXFFFSXX 318
F FF FF FFF L F F F F
Sbjct: 14 FESLFFRLFFVCSFFFPLLYSFIFATLHAFVFLFSHTLVSSQFRRLKLPYHHHHTFTIEA 73
Query: 317 FFFFXXXXFFFF 282
FF++ FFFF
Sbjct: 74 FFYWFFFFFFFF 85
Score = 27.9 bits (59), Expect = 3.1
Identities = 21/64 (32%), Positives = 22/64 (34%)
Frame = -2
Query: 594 FFXXXXFFXXFFSXXXFFFXFPXXXXXXAXXXFXXXFFXFFFXXFFFLXFFXFFFXXFFX 415
FF FF FFS F + FF FFF F FF F F
Sbjct: 74 FFYWFFFFFFFFSHCRRFHIAIFIHPYDSNVV---PFFCFFFY-FSLFSFFSFLFTSLHF 129
Query: 414 XFFF 403
FFF
Sbjct: 130 NFFF 133
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 28.3 bits (60), Expect = 2.4
Identities = 22/117 (18%), Positives = 49/117 (41%)
Frame = +1
Query: 226 KKXXKKXXKKXXXKKKKXXKKKXXXXXKKKXXXEKKKXXKXXKKXKKKKKIXKXFXFLKK 405
+K ++ K + ++ K+K KK EKK+ K K K+++ +
Sbjct: 562 EKVAQQRQAKLLEEIEEENKRKQERELKKIREKEKKRDKKKQLKLAKEEERQRREAERLA 621
Query: 406 KKXXKKTXKKKXKKXKKKKXXKKKXKKXXXKXXXRXXXXXGGKXKKKXXGGKKXXKK 576
++ +K + K ++ +KK +++ K+ K + +K+ KK K+
Sbjct: 622 EQAAQKALEAKRQEEARKKREEQRLKREQEKKQQELERQKREEKQKQKEREKKLKKQ 678
Score = 27.5 bits (58), Expect = 4.2
Identities = 13/73 (17%), Positives = 38/73 (52%)
Frame = +1
Query: 265 KKKKXXKKKXXXXXKKKXXXEKKKXXKXXKKXKKKKKIXKXFXFLKKKKXXKKTXKKKXK 444
+KK+ ++ KK+ E++K + K+ +++KK+ K ++K ++ ++ +
Sbjct: 638 RKKREEQRLKREQEKKQQELERQKREEKQKQKEREKKLKKQQQEADREKMAREQRLREEE 697
Query: 445 KXKKKKXXKKKXK 483
+ + + K++ K
Sbjct: 698 EKRILEERKRREK 710
Score = 26.6 bits (56), Expect = 7.3
Identities = 19/97 (19%), Positives = 42/97 (43%)
Frame = +1
Query: 307 KKKXXXEKKKXXKXXKKXKKKKKIXKXFXFLKKKKXXKKTXKKKXKKXKKKKXXKKKXKK 486
K+K E KK + KK KKK++ ++++ ++ ++ +K + K ++ KK
Sbjct: 581 KRKQERELKKIREKEKKRDKKKQLKLAKEEERQRREAERLAEQAAQKALEAKRQEEARKK 640
Query: 487 XXXKXXXRXXXXXGGKXKKKXXGGKKXXKKXXXXKKK 597
+ R + +++ K+ K+ KK
Sbjct: 641 REEQRLKREQEKKQQELERQKREEKQKQKEREKKLKK 677
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 26.6 bits (56), Expect = 7.3
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 325 EKKKXXKXXKKXKKKKKIXKXFXFLKKKKXXKKTXKKK 438
EK + K+ K++KK K KK+K KK KKK
Sbjct: 435 EKDEDEAAKKEEKRRKKEAKKEKKEKKEKKEKKEKKKK 472
Score = 26.2 bits (55), Expect = 9.6
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 226 KKXXKKXXKKXXXKKKKXXKKKXXXXXKKKXXXEKKK 336
+K + KK ++KK KK+ +KK EKKK
Sbjct: 435 EKDEDEAAKKEEKRRKKEAKKEKKEKKEKKEKKEKKK 471
>SPACUNK4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 188
Score = 26.6 bits (56), Expect = 7.3
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Frame = +1
Query: 310 KKXXXEKKKXXKXXKKXKKKKKIXKXFXFL-----KKKKXXKKTXKKKXKKXKKK 459
KK +K K K KK+K+ + + K+ +KT K K KK KK+
Sbjct: 133 KKAEASRKMEVKAPAKESKKRKVNELSQDVISLHSPKESNARKTKKNKNKKKKKR 187
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 26.2 bits (55), Expect = 9.6
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +1
Query: 250 KKXXXKKKKXXKKKXXXXXKKKXXXEKKKXXKXXKKXKKKKK 375
+K K+KK K+K KKK + + KK KKKKK
Sbjct: 456 EKPSKKEKKDKKEKKKEKSKKKRSADDAS--EEVKKSKKKKK 495
Score = 26.2 bits (55), Expect = 9.6
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +1
Query: 331 KKXXKXXKKXKKKKKIXKXFXFLKKKKXXKKTXKKKXKKXKKKK 462
+K K KK KK+KK K KKK+ ++ K KKKK
Sbjct: 456 EKPSKKEKKDKKEKKKEKS----KKKRSADDASEEVKKSKKKKK 495
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.133 0.362
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 644,892
Number of Sequences: 5004
Number of extensions: 7230
Number of successful extensions: 222
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 687563588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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