Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_P04
         (1232 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    28   3.1  
SPBC651.07 |csa1||sequence orphan|Schizosaccharomyces pombe|chr ...    27   5.3  
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe...    27   5.3  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   9.3  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    26   9.3  

>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = -3

Query: 816 LIWNHHYNY---PEENLGTHCCRYHYDTKICAACWS 718
           L W HHYNY     E++      Y++D  +CA+ ++
Sbjct: 85  LKWTHHYNYITQLSEDITQLSWGYNFDLLLCASSYT 120


>SPBC651.07 |csa1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 268

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 922 ESYWDELLLVEEDEYAESPIGHPSALY 842
           + +W E    E+ E AE+P G+ SAL+
Sbjct: 142 DQFWKEEWSTEQYEIAENPSGYASALH 168


>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 659

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 663 FQPPDSHSSPLQDILDLQHSNMQHKSSYRNGTYSSEYPSS 782
           +Q P  H+    +  D   SN   K  Y NGT +SE+  S
Sbjct: 82  YQEPSFHTKTSLNGSDTISSNFLSKYEYSNGTSTSEFIDS 121


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -3

Query: 603 KNLFYYQYITVNFMVSQFNLQRLQSFNQ 520
           K LFY  +I ++F+V+QF     Q+++Q
Sbjct: 513 KYLFYSNFIWISFIVAQFVTLCTQTYDQ 540


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 147 KSALLNLINQNTXFE*VVEHNTEPNRDK 230
           K  LLN++N N  F    E +T+PN D+
Sbjct: 266 KLNLLNILNLNLFFSKSQEQSTDPNFDE 293


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,198,997
Number of Sequences: 5004
Number of extensions: 83685
Number of successful extensions: 216
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 669373152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)