Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_P04
         (1232 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66564-8|CAM84731.1|  892|Caenorhabditis elegans Hypothetical pr...    30   3.9  
U97550-3|AAK18981.2|  423|Caenorhabditis elegans Hypothetical pr...    30   3.9  
AL032659-3|CAA21749.2|  892|Caenorhabditis elegans Hypothetical ...    30   3.9  
U39648-3|AAM15603.1|  434|Caenorhabditis elegans Hypothetical pr...    29   8.9  
U10402-7|AAA19069.1|  192|Caenorhabditis elegans C. elegans neur...    29   8.9  

>Z66564-8|CAM84731.1|  892|Caenorhabditis elegans Hypothetical
           protein Y71H9A.1 protein.
          Length = 892

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 17/71 (23%), Positives = 28/71 (39%)
 Frame = -3

Query: 924 LSHIGMNCYWLKKMNMLSHPLDIHQHCIHLRIGFHHLIWNHHYNYPEENLGTHCCRYHYD 745
           L+ I  + YW           ++H+  + LR      +W  H+   E N G      +Y 
Sbjct: 296 LNQIHKSVYWYTLSTFYLTEHEMHK-VVALRPKNPEQLWKRHF---ESNFGRIRALKNYT 351

Query: 744 TKICAACWSAG 712
            ++C  CW  G
Sbjct: 352 EQLCLRCWELG 362


>U97550-3|AAK18981.2|  423|Caenorhabditis elegans Hypothetical
           protein T20F7.6 protein.
          Length = 423

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +3

Query: 627 KNIMSSNPQWKMFQPPDSHSSPLQDILDLQHSNMQHKSSYRNGTYSSEYPSS 782
           +NI +    W      D +   L++IL    +N +H+SS  +   +S  PS+
Sbjct: 360 RNITAPKKHWARHHTGDMNDKELREILLTNAANFEHESSNSSSPSNSALPSN 411


>AL032659-3|CAA21749.2|  892|Caenorhabditis elegans Hypothetical
           protein Y71H9A.1 protein.
          Length = 892

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 17/71 (23%), Positives = 28/71 (39%)
 Frame = -3

Query: 924 LSHIGMNCYWLKKMNMLSHPLDIHQHCIHLRIGFHHLIWNHHYNYPEENLGTHCCRYHYD 745
           L+ I  + YW           ++H+  + LR      +W  H+   E N G      +Y 
Sbjct: 296 LNQIHKSVYWYTLSTFYLTEHEMHK-VVALRPKNPEQLWKRHF---ESNFGRIRALKNYT 351

Query: 744 TKICAACWSAG 712
            ++C  CW  G
Sbjct: 352 EQLCLRCWELG 362


>U39648-3|AAM15603.1|  434|Caenorhabditis elegans Hypothetical
           protein T13C5.2 protein.
          Length = 434

 Score = 28.7 bits (61), Expect = 8.9
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -3

Query: 876 LSHPLDIHQHCIHLRIGFHHLIWNHHYNYPEENLGTHCCRYHYDTKICAAC 724
           L   +D H HC   R   ++  ++++YNY   N    CC YH  +  C AC
Sbjct: 165 LPRVVDHHSHC---RRSNNNNNYDYNYNYHHNN----CCNYHNHS--CNAC 206


>U10402-7|AAA19069.1|  192|Caenorhabditis elegans C. elegans neuro d
           homolog protein1 protein.
          Length = 192

 Score = 28.7 bits (61), Expect = 8.9
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 639 SSNPQWKMFQPPDSHSSPLQDILDLQHSNMQHKSSYRN 752
           S +P    + P    ++PLQ   D Q+  M H+ S++N
Sbjct: 149 SCSPPQYYYSPTQPSAAPLQGSCDPQYQQMYHQHSHQN 186


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,445,847
Number of Sequences: 27780
Number of extensions: 478901
Number of successful extensions: 1243
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1243
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3412067766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)