Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_P04
         (1232 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    26   0.59 
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   5.5  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   9.6  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   9.6  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 26.2 bits (55), Expect = 0.59
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +3

Query: 702 ILDLQHSNMQHKSSYRNGTYSSEYPSSPRDNYN 800
           I  L +  + + ++Y N  Y++ Y +   +NYN
Sbjct: 315 ISSLSNKTIHNNNNYNNNNYNNNYNNYNNNNYN 347


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/26 (30%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = -1

Query: 602 KICFITNISQLILWCHN--LIYSDYK 531
           +IC + +I+  + +CHN  ++++D K
Sbjct: 157 RICILKSITCALQFCHNAGIVHADVK 182


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 717 HSNMQHKSSYRNGTYSSEYPSSPRDNYN 800
           H+N  +K +Y N  Y++   ++  +NYN
Sbjct: 324 HNNNNYKYNYNNNNYNN---NNYNNNYN 348


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 877 AESPIGHPSALYPPEN 830
           A SP+G PSA   P++
Sbjct: 92  ANSPVGSPSAALQPQH 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 287,128
Number of Sequences: 438
Number of extensions: 5860
Number of successful extensions: 23
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 42022050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)