Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_P03
         (1235 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    35   0.020
SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5 |Schizosac...    27   5.4  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    27   7.1  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    26   9.4  

>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 35.1 bits (77), Expect = 0.020
 Identities = 22/84 (26%), Positives = 44/84 (52%)
 Frame = +2

Query: 515 ETIFKSNDNSQLLIEIGPRFNFSTADSSNSVQICESVGLRDVVRLEVSTRYLITFGKQKN 694
           E+ FK +  +  ++ + PR    +  SS +  I    G +DV+R+E    Y + F  + +
Sbjct: 59  ESEFKPDGTT--MVYVFPRPGTISPWSSKATNIANVCGYKDVIRIERGIAYSVVF--KDD 114

Query: 695 VTEKHFENLAAVLHDRMTQCVYTK 766
           ++E+  ++    L+DRMT+ +  K
Sbjct: 115 ISEEMLKSALNHLYDRMTEALRFK 138


>SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
 Frame = +2

Query: 296 SIVRFFSTEAFSLHKTNEILQKL--KFVDSDIKDLSTELCYHVELAEGCEYLNINQIKVL 469
           +++ +FS   F  HK+N  + K+  +F   D+ DL+++L    +   G +++ I++    
Sbjct: 32  NVLEYFSQSPFYSHKSNNEMLKMQSQFNALDLGDLNSQL----KRLTGIQFVIIHERPPF 87

Query: 470 KWLL--SSPLQPQAVRNETI-FKSNDN 541
            W++   + L    V+  T+ F  N+N
Sbjct: 88  LWVIQKQNRLNENEVKPLTVYFVCNEN 114


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1516

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 8/111 (7%)
 Frame = +2

Query: 494 QPQAVRNETIF----KSNDNSQL----LIEIGPRFNFSTADSSNSVQICESVGLRDVVRL 649
           QP   RN  IF      + + QL    L+E    FN+    + ++++     G+ D    
Sbjct: 267 QPNQERNYHIFYQILAGSSSEQLEKWKLVENSQEFNYLKQGNCSTIE-----GVNDKEEF 321

Query: 650 EVSTRYLITFGKQKNVTEKHFENLAAVLHDRMTQCVYTKDNLPRKSFNEGL 802
           + +   L T G   +  E  F  LAA+LH    +  +++++    S NE L
Sbjct: 322 KATVDALKTVGIDNDTCECIFSLLAALLHIGNIEVKHSRNDAYIDSKNENL 372


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +1

Query: 811 FRTMVCCSLARARHFCYEKGNDKLGWH 891
           F  M   SL RA +FC     +K  WH
Sbjct: 727 FENMAVRSLNRAEYFCTGDFGEKTDWH 753


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,167,078
Number of Sequences: 5004
Number of extensions: 84021
Number of successful extensions: 180
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 671365334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)