Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_P03
         (1235 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1608 - 38612754-38616947,38617030-38617095                      130   3e-30
05_01_0033 + 220125-220190,220274-224445,224863-224949,225048-22...   127   2e-29
06_03_0295 - 19235755-19235949,19236330-19236548,19237297-19237503     29   7.5  

>01_06_1608 - 38612754-38616947,38617030-38617095
          Length = 1419

 Score =  130 bits (313), Expect = 3e-30
 Identities = 80/245 (32%), Positives = 138/245 (56%), Gaps = 7/245 (2%)
 Frame = +2

Query: 299  IVRFFSTEAFSLHKTNEILQKLKF-VDSDIKDLSTELCYHVELAEGCEYLNINQIKVLKW 475
            +++ +        +T E+L++++  V S+I  + TE C++++L      L   ++  L+W
Sbjct: 94   VIQLYRIPYLQESETIELLRQVQAKVSSNIVGIKTEQCFNIQLDNA---LTPEKLATLQW 150

Query: 476  LLSSPLQPQAVRNETIFK---SNDNSQLLIEIGPRFNFSTADSSNSVQICESVGLRDVVR 646
            LL+   +P  ++ ++  +   S     +++E+GPR  FSTA S+N+V IC+S+ L +V R
Sbjct: 151  LLAETYEPDKLQAQSFLEEEISRSPYSVIVEVGPRMTFSTAFSTNAVSICKSLSLMEVTR 210

Query: 647  LEVSTRYLITFGKQKN-VTEKHFENLAAVLHDRMTQCVYTKDNLPRKSFNEGLPKDLEPW 823
            LE S RYL+        + E    + AA++HDRMT+CVY   N      ++ +P   EP 
Sbjct: 211  LERSRRYLLCLDPGNGPLDESQLNDFAALVHDRMTECVY--PNKLTSFHSDVVP---EPV 265

Query: 824  FVVPLQEQGISAMRKVMIN*VGI*YMGHGI--YMDLFVNKLKRDPTSVXLFDXXXSNXEH 997
             +VP+ E+G  A+ ++ +  +G+ +    I  Y  LF + +KR+PT+V LFD   SN EH
Sbjct: 266  RIVPVIERGREALEEINVK-MGLAFDEQDIKYYTHLFRDDIKRNPTTVELFDIAQSNSEH 324

Query: 998  SRXGF 1012
            SR  F
Sbjct: 325  SRHWF 329


>05_01_0033 + 220125-220190,220274-224445,224863-224949,225048-225084,
            225296-225356,225666-226918
          Length = 1891

 Score =  127 bits (307), Expect = 2e-29
 Identities = 79/232 (34%), Positives = 134/232 (57%), Gaps = 7/232 (3%)
 Frame = +2

Query: 338  KTNEILQKLKF-VDSDIKDLSTELCYHVELAEGCEYLNINQIKVLKWLLSSPLQPQAVRN 514
            +T E+L++++  V S+I  + TE C++++L      L   ++  L+WLL+   +P  ++ 
Sbjct: 103  ETIELLRQVQAKVSSNIVGIKTEQCFNIQLDNA---LASEKLATLQWLLAETYEPDKLQA 159

Query: 515  ETIFK---SNDNSQLLIEIGPRFNFSTADSSNSVQICESVGLRDVVRLEVSTRYLITFGK 685
            ++  +   + +   +++E+GPR  FSTA S+N+V IC+S+ L +V RLE S RYL+    
Sbjct: 160  QSFLEEEVARNPYSVIVEVGPRMTFSTAFSTNAVSICKSLSLMEVTRLERSRRYLLCLDP 219

Query: 686  QKN-VTEKHFENLAAVLHDRMTQCVYTKDNLPRKSFNEGLPKDLEPWFVVPLQEQGISAM 862
                + E    +  A++HDRMT+CVY K      SF+  +    EP  +VP+ E+G  A+
Sbjct: 220  GYGPLDESQLNDFTALVHDRMTECVYPK---KLTSFHSDVVP--EPVRIVPVIERGREAL 274

Query: 863  RKVMIN*VGI*YMGHGI--YMDLFVNKLKRDPTSVXLFDXXXSNXEHSRXGF 1012
             ++ +  +G+ +    I  Y  LF + +KR+PT+V LFD   SN EHSR  F
Sbjct: 275  EEINVK-MGLAFDEQDIKYYTHLFRDDIKRNPTTVELFDIAQSNSEHSRHWF 325


>06_03_0295 - 19235755-19235949,19236330-19236548,19237297-19237503
          Length = 206

 Score = 29.1 bits (62), Expect = 7.5
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +2

Query: 314 STEAFSLHKTNEILQKLKFVDSD--IKDLSTELCYHVELAEG 433
           STE   L   NE + K+KF+  D  +K+ S+ L  H E+ +G
Sbjct: 116 STERLELLDDNEHILKVKFIGGDHMLKNYSSILTIHSEVIDG 157


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,656,758
Number of Sequences: 37544
Number of extensions: 458769
Number of successful extensions: 934
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3806166204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)