Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_P02
         (1181 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A3IUI4 Cluster: Putative uncharacterized protein; n=1; ...    34   6.2  

>UniRef50_A3IUI4 Cluster: Putative uncharacterized protein; n=1;
           Cyanothece sp. CCY 0110|Rep: Putative uncharacterized
           protein - Cyanothece sp. CCY 0110
          Length = 507

 Score = 34.3 bits (75), Expect = 6.2
 Identities = 32/127 (25%), Positives = 60/127 (47%)
 Frame = +1

Query: 289 GRAPATHTTPLLMTTEPTATPIPMIPHIINRKVRIHTTGSTLILEVILRGKIMSILLAQP 468
           G A  T  T L+ +    AT   M P +IN K ++    +  +L  I+  + ++ L ++ 
Sbjct: 225 GMAMVTLGTFLIASITLYATHKSMGPFVINGKAQLVDL-NIFLLGAIMTAQFVAALFSEL 283

Query: 469 IILVHQLARTAISGGHHTDQNREVVLLINVERDLILEKEKAMTVIDIIELEAVLLQNVKN 648
               +QL R + S   H    +E ++++N ER+++      + +    + E  LLQ +  
Sbjct: 284 KDRENQLQRLSTSVFDHV---QEAIVILNSEREIVDVNHSFIEITGYTKNEEKLLQ-MAL 339

Query: 649 IHPVTGL 669
             P+TGL
Sbjct: 340 FDPLTGL 346


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 717,793,767
Number of Sequences: 1657284
Number of extensions: 11045470
Number of successful extensions: 32635
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 30947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32598
length of database: 575,637,011
effective HSP length: 102
effective length of database: 406,594,043
effective search space used: 118318866513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)