Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_P02
         (1181 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    27   3.8  
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ...    27   3.8  
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   8.9  
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   8.9  
SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar...    26   8.9  
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom...    26   8.9  
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   8.9  

>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 475 LVHQLARTAISGGHHTDQNREVVLLINVE 561
           L+ ++  T  SG HHTD N +   + NV+
Sbjct: 787 LIDEIDSTEYSGSHHTDDNSDANKVENVK 815


>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +1

Query: 472 ILVHQLARTAISGGHHTDQNREVVLLINVERDLILEKEKAMTVI 603
           + V    R  IS GH  ++  ++ LLI  + +++ +K K +  +
Sbjct: 466 VKVQPSLRICISTGHSAEEIEKLALLIKEKTEIVFDKHKVINQV 509


>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = +1

Query: 376 NRKVRIHTTGSTLILEVIL---RGKIMSILLAQPIIL 477
           N  V +  TG  L++++++     K +SILL+QPI++
Sbjct: 241 NEPVALRLTGKQLLIKLLILLSMKKPISILLSQPILI 277


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +3

Query: 789 TPDSPAN--RSSPHSRNMSKRSRTPSNNHSVSVS 884
           TP +PA   +SS H+R  SK++  PS+  + S +
Sbjct: 497 TPSTPAKSAQSSKHARRPSKQASAPSSPGTTSAA 530


>SPAC1705.03c ||SPAC23H4.19|conserved fungal
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = +1

Query: 553 NVERDLILEKEKAMTVIDIIELEAVL-LQNVKNIHPVTGLAPALIRTLVINTEGTLNLVI 729
           +V+ D+++   + +T +    L+ V    NV N+  +  LA     T  + + G+LNL +
Sbjct: 69  SVQGDVVVSDGQYLTSLSFPSLKNVSGAFNVNNMIRMNNLA-----TPELTSVGSLNLAV 123

Query: 730 LPRLKDL 750
           LP L++L
Sbjct: 124 LPNLQEL 130


>SPBPB2B2.16c |||MFS family membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = +1

Query: 376 NRKVRIHTTGSTLILEVIL---RGKIMSILLAQPIIL 477
           N  V +  TG  L++++++     K +SILL+QPI++
Sbjct: 241 NEPVALRLTGKQLLIKLLILLSMKKPISILLSQPILI 277


>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = +1

Query: 376 NRKVRIHTTGSTLILEVIL---RGKIMSILLAQPIIL 477
           N  V +  TG  L++++++     K +SILL+QPI++
Sbjct: 241 NEPVALRLTGKQLLIKLLILLSMKKPISILLSQPILI 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,986,244
Number of Sequences: 5004
Number of extensions: 46782
Number of successful extensions: 136
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 635506058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)