Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_P02
         (1181 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0725 + 27155736-27155746,27155798-27155949,27156108-271580...    32   1.0  
04_03_0144 + 11796550-11797178,11797808-11797902,11798053-117981...    29   9.5  
03_05_0850 + 28206166-28206767,28207648-28207891,28208076-282083...    29   9.5  

>03_05_0725 +
           27155736-27155746,27155798-27155949,27156108-27158068,
           27159169-27159397,27159506-27159634,27159725-27159838,
           27160059-27160258,27160301-27160599,27160713-27160923,
           27161017-27161172,27161290-27161447,27161532-27161724,
           27162015-27162406,27162537-27162717,27162802-27163031,
           27163108-27163753,27163833-27163902,27163994-27164244
          Length = 1860

 Score = 31.9 bits (69), Expect = 1.0
 Identities = 16/59 (27%), Positives = 35/59 (59%)
 Frame = +1

Query: 487 LARTAISGGHHTDQNREVVLLINVERDLILEKEKAMTVIDIIELEAVLLQNVKNIHPVT 663
           +A + +   +    NRE VLL + +   +L  ++ +  I++++LE++L  N +NI+ +T
Sbjct: 521 IALSLMRSSNEAKINREFVLLPHNKLVKLLTADRILREINLVKLESLLWHNDENINKIT 579


>04_03_0144 +
           11796550-11797178,11797808-11797902,11798053-11798102,
           11798382-11799293
          Length = 561

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 331 TEPTATPIPMIPHIINRKVRIHTTGSTLILEVILRGK 441
           +E  ATP P +P +  R+ R    G  L L++ LRG+
Sbjct: 109 SEEDATPRPSVPFVAVREEREEEEGRGLDLKLCLRGR 145


>03_05_0850 +
           28206166-28206767,28207648-28207891,28208076-28208389,
           28209013-28209067
          Length = 404

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +3

Query: 786 LTPDSPANRSSPHSRNMSKRSRTPSNNH 869
           L P S + R SPHS  +S  S TPS  H
Sbjct: 12  LPPSSSSPRISPHSTPVSLTSATPSGVH 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,096,546
Number of Sequences: 37544
Number of extensions: 293358
Number of successful extensions: 716
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3619930760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)