Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_P02
         (1181 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75711-4|CAB00030.1|  134|Caenorhabditis elegans Hypothetical pr...    29   6.4  
Z83224-1|CAB05720.1|  994|Caenorhabditis elegans Hypothetical pr...    29   8.5  
Z79754-14|CAB02102.1|  994|Caenorhabditis elegans Hypothetical p...    29   8.5  

>Z75711-4|CAB00030.1|  134|Caenorhabditis elegans Hypothetical
           protein K02B12.6 protein.
          Length = 134

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +3

Query: 366 TYYQPQSSDSYYGKYLDTRGYSTRQDYEYSARSTDH 473
           +YYQP  +D+Y  KY +T  Y    ++  + + + +
Sbjct: 34  SYYQPFQTDTYGSKYYNTESYGKYDEHGNNGKDSHY 69


>Z83224-1|CAB05720.1|  994|Caenorhabditis elegans Hypothetical
           protein F25H2.13 protein.
          Length = 994

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +1

Query: 634 QNVKNIHPVTGLAPALIRTLVINTEGTL 717
           QN KN+  VTG+A AL+R + +  +G L
Sbjct: 541 QNRKNLDYVTGVAEALLRVMEVIPQGIL 568


>Z79754-14|CAB02102.1|  994|Caenorhabditis elegans Hypothetical
           protein F25H2.13 protein.
          Length = 994

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +1

Query: 634 QNVKNIHPVTGLAPALIRTLVINTEGTL 717
           QN KN+  VTG+A AL+R + +  +G L
Sbjct: 541 QNRKNLDYVTGVAEALLRVMEVIPQGIL 568


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,470,948
Number of Sequences: 27780
Number of extensions: 264329
Number of successful extensions: 855
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3234681980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)