Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_P02
         (1181 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   9.1  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   9.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   9.1  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   9.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   9.1  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 9.1
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -2

Query: 112 LAVSWIYFXRKWQPHNRFTNEKEQY 38
           L+V   +    W P   F NEK+ Y
Sbjct: 83  LSVGSEFIKNIWVPDTFFVNEKQSY 107


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 9.1
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -2

Query: 112 LAVSWIYFXRKWQPHNRFTNEKEQY 38
           L+V   +    W P   F NEK+ Y
Sbjct: 83  LSVGSEFIKNIWVPDTFFVNEKQSY 107


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 9.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 307 HTTPLLMTTEPTATPIPMIPH 369
           H+TPL  ++ P A  I   PH
Sbjct: 444 HSTPLAHSSYPAAIQIGHTPH 464


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.2 bits (45), Expect = 9.1
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -2

Query: 112 LAVSWIYFXRKWQPHNRFTNEKEQY 38
           L+V   +    W P   F NEK+ Y
Sbjct: 22  LSVGSEFIKNIWVPDTFFVNEKQSY 46


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 9.1
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 189 RGPWDGGPPGA 221
           +GP  GGPPGA
Sbjct: 44  QGPPPGGPPGA 54


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,174
Number of Sequences: 438
Number of extensions: 3151
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 40247334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)