Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_P01
         (1230 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch...    28   2.3  
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    28   3.1  
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    27   4.0  
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    26   9.3  
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    26   9.3  
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c...    26   9.3  

>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
           Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 830

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 6/51 (11%)
 Frame = -2

Query: 683 PRSGAFPGVFSLPSTP------GHTRRSNIPCLSMPCFPNIDMVVPPTTIT 549
           P  G F G FS  S P       HT R  IP +    FP+    +  T +T
Sbjct: 468 PNEGVFQGSFSPESAPVNNHAFPHTSRMQIPYMKPNAFPSNPTYIASTPVT 518


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 20/78 (25%), Positives = 33/78 (42%)
 Frame = +1

Query: 349 DGCSDLYVTCQILSDGEPLALPVMTTYKAFTTRWNWNEWVTLPVYYSDLPRNAILAMTIY 528
           +G SD Y+T      G+PL     T          WNE+  +PV+   +     +++ ++
Sbjct: 487 NGLSDAYITVGFHKFGKPL---YCTRVVKQDLNPIWNEYAFIPVFPDQVKAGEKISIELW 543

Query: 529 DCAGPGKVMVVGGTTISI 582
           D        VVG T I +
Sbjct: 544 DSDRFSPDDVVGRTKIGL 561


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -2

Query: 725 CFLASFASRCICSLPRSGAFPGVFSLPSTPGHTRRSNI 612
           C    FA+R + S P    FP   S PSTP +   + +
Sbjct: 121 CNPVPFATRLLQSTPHRQLFPPTPSTPSTPSYNSTAKL 158


>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +1

Query: 436 FTTRWNWNEWVTLPVYYSDL-PRNAILAMTI 525
           F   W WNEW+   V   DL P+   +  TI
Sbjct: 452 FNFHWKWNEWIP-DVELDDLHPKKVFMRETI 481


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 677 SGAFPGVFSLPSTPGHTRRSNIPCLSM 597
           +G FPG   L     H++R+NIP +S+
Sbjct: 539 AGQFPGFAHLLEERIHSKRANIPTISV 565


>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 639 PGPHSQIEHPLSQHAVLPEYRY 574
           P P   I HPLSQH   PE+++
Sbjct: 101 PRPMHPISHPLSQHKT-PEFKH 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,365,987
Number of Sequences: 5004
Number of extensions: 74419
Number of successful extensions: 196
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 667380970
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)