Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_P01
(1230 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0128 - 12848227-12848619,12848699-12848827,12849108-128492... 106 3e-23
11_01_0232 + 1794081-1795175,1796087-1796782 30 3.2
06_01_0036 + 364316-365758 30 3.2
04_04_0304 + 24271979-24272345,24273315-24273353,24273930-242740... 30 3.2
12_02_0821 + 23443733-23444425 30 4.3
12_01_0346 + 2652181-2653566 30 4.3
03_06_0572 + 34812203-34812278,34812485-34813768,34813973-348140... 30 4.3
11_04_0474 + 18162538-18163731,18163800-18163855,18163951-181640... 29 5.7
04_04_0784 - 28044883-28045654,28046626-28046859,28047328-28047875 29 5.7
12_01_0229 + 1731288-1732513,1733037-1733106,1733267-1734001 29 7.5
01_01_0652 + 4975091-4975585 29 7.5
09_04_0292 - 16436918-16439233 29 9.9
08_02_0620 + 19387935-19388279 29 9.9
>08_02_0128 -
12848227-12848619,12848699-12848827,12849108-12849279,
12849336-12849488,12850017-12850271,12850846-12851000,
12853319-12853456,12853545-12853715,12853878-12854063,
12854169-12854290,12855617-12855752,12856108-12856203,
12856294-12856356,12856846-12856993,12857324-12857514,
12857916-12857989,12858039-12858171,12858299-12858460,
12861649-12861745,12861866-12861962,12863994-12864141
Length = 1072
Score = 106 bits (255), Expect = 3e-23
Identities = 55/140 (39%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Frame = +1
Query: 364 LYVTCQILSDGEPLALPVMTTYKAFTTRWNWNEWVTLPVYYSDLPRNAILAMTIYDCA-G 540
L+V C + DG L T K+ + + WNE VTL Y DL + LA T++D + G
Sbjct: 62 LFVECTLYIDGVQFGLSTNTRLKSLGSPYCWNELVTLSAKYRDLTPFSHLAFTVWDMSSG 121
Query: 541 PGKVMVVGGTTISIFGKHGMLRQGMFDLRVWPG--VEGS--EKTPGKAPDRGKEQMQRLA 708
+ +VGGTTIS+F L+ G LRVWP +GS TPGK P +E+++RL
Sbjct: 122 EDNIYIVGGTTISLFNSKNQLKTGRLRLRVWPNKMADGSLSTSTPGKVPKTKREEIERLE 181
Query: 709 KLAKKHRNGHLPKVXWLDRL 768
++A K+ G +P + WLD L
Sbjct: 182 RVANKYIRGQIPHIGWLDNL 201
>11_01_0232 + 1794081-1795175,1796087-1796782
Length = 596
Score = 30.3 bits (65), Expect = 3.2
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = -3
Query: 712 ASQVAASVLCRGPEPSPESSRCPQPRATLADRTSPVSACRASRISI 575
A +A VLC P+P P SS P +TL D R R S+
Sbjct: 25 ARHIAVPVLCPTPQPPPPSSPPAPPISTLPDDLLLECLARVPRASL 70
>06_01_0036 + 364316-365758
Length = 480
Score = 30.3 bits (65), Expect = 3.2
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -3
Query: 676 PEPSPESSRCPQPRATLADRTSP 608
P P P+SS+ P+P + L +R+SP
Sbjct: 15 PLPEPDSSKSPEPTSVLYNRSSP 37
>04_04_0304 +
24271979-24272345,24273315-24273353,24273930-24274058,
24274516-24274743,24275621-24275826
Length = 322
Score = 30.3 bits (65), Expect = 3.2
Identities = 17/59 (28%), Positives = 24/59 (40%)
Frame = +1
Query: 295 EYDKLLSDPMLKFSGLYQDGCSDLYVTCQILSDGEPLALPVMTTYKAFTTRWNWNEWVT 471
++DK D + F + G S L V ++ D PLAL WNW + T
Sbjct: 119 QFDKGFEDASIPFGPVEASGRSLLSVEDRLEPDSHPLALTADAVATNGVNPWNWRDTST 177
>12_02_0821 + 23443733-23444425
Length = 230
Score = 29.9 bits (64), Expect = 4.3
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 685 CRGPEPSPESSRCPQPRATLADRTSPVSACRA-SRISIWSCHRPPSL 548
CRGP P RCPQ R T D +CR+ + + C PP++
Sbjct: 166 CRGP-PEYFKGRCPQTRTTPGDVEPVPQSCRSPGELKVIFC--PPTM 209
>12_01_0346 + 2652181-2653566
Length = 461
Score = 29.9 bits (64), Expect = 4.3
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = +1
Query: 457 NEWVTLPVYYSDLPRNAILAMTIYDCAGPGKVMVVGGTTISIFG---KHGMLRQG 612
N VT+P Y+SD PR A AM AG V ++ T + HG LR G
Sbjct: 179 NAVVTVPYYFSDGPREA--AMNAARMAGLTTVRIIDEPTAAAVSHGLHHGRLRDG 231
>03_06_0572 +
34812203-34812278,34812485-34813768,34813973-34814049,
34814299-34814646
Length = 594
Score = 29.9 bits (64), Expect = 4.3
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = -2
Query: 665 PGVFSLPSTPGHTRRSNIPCLSMPCFPN-IDMVVP-PTTITLPGP 537
PG+ ++PST T SN P L P +P + +P PTT T P P
Sbjct: 273 PGIVTVPSTNPATGYSNNPNLP-PLYPEPTPVTMPDPTTTTTPTP 316
>11_04_0474 +
18162538-18163731,18163800-18163855,18163951-18164011,
18164107-18165495,18166024-18166635,18166706-18166852,
18166941-18167209,18167322-18167412,18167500-18167757,
18168376-18168450,18168937-18168945
Length = 1386
Score = 29.5 bits (63), Expect = 5.7
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = -2
Query: 716 ASFASRCICSLPRSGAFPGVFSLPSTPGHTRRSNIPCLSMPCFPNIDMVVPPTTI 552
++ AS + SG PG+ P T + S+ P +S+P D+ V PT +
Sbjct: 783 STLASNLNNTTNNSGTSPGIVQAPQTNSAPQTSSAPAVSLPAMLK-DIAVNPTML 836
>04_04_0784 - 28044883-28045654,28046626-28046859,28047328-28047875
Length = 517
Score = 29.5 bits (63), Expect = 5.7
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +1
Query: 223 VYSSSLDYKVEIKIGTLEGKRTKPEYDKLLSDPMLKFSGLYQDGCSDLY 369
V +++ YK + +EG+ K D +DP++ F G++ D S Y
Sbjct: 436 VEGTTIGYKRLFQFPVVEGQFLKLSIDGARADPLISFFGVFTDSFSVTY 484
>12_01_0229 + 1731288-1732513,1733037-1733106,1733267-1734001
Length = 676
Score = 29.1 bits (62), Expect = 7.5
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = -3
Query: 712 ASQVAASVLCRGPEPSPESSRCPQPRATLADRTSPVSACRASRISI 575
A +A VLC P+P P SS P + L D R R SI
Sbjct: 25 ARHIAVPVLCPTPQPPPPSSPPAPPISALPDDLLLECLARVPRASI 70
>01_01_0652 + 4975091-4975585
Length = 164
Score = 29.1 bits (62), Expect = 7.5
Identities = 18/49 (36%), Positives = 21/49 (42%)
Frame = +3
Query: 555 GGRWHDHIDIREARHAETGDVRSASVARG*GQREDSGEGSGPRQRTDAA 701
GG W E RH E R + +G QRE G G R R +AA
Sbjct: 20 GGGWAPTRRRPEGRHGEAAGKRREAAGKGGRQRE--ARGGGRRMRWEAA 66
>09_04_0292 - 16436918-16439233
Length = 771
Score = 28.7 bits (61), Expect = 9.9
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +1
Query: 274 EGKRTKPEYDKLLSDPMLKFSGLYQDGCSDLYVTCQILSDGEPLALPVMTTYKAFTTRWN 453
E + T +YDKL+ L +DG + C +L +G LAL ++ K RW
Sbjct: 620 ECRTTSDKYDKLMK--------LGRDGWKEQEAGCPLLYEGAVLALNLVDRKKDAEERWK 671
Query: 454 --WNEWVTLPVYYSDLPRNAILA 516
+ W L +Y + R ++ A
Sbjct: 672 VLAHFWANLLLYIAPSDRASVHA 694
>08_02_0620 + 19387935-19388279
Length = 114
Score = 28.7 bits (61), Expect = 9.9
Identities = 18/61 (29%), Positives = 21/61 (34%)
Frame = +3
Query: 534 CRPR*SDGGRWHDHIDIREARHAETGDVRSASVARG*GQREDSGEGSGPRQRTDAATCEA 713
C S G RW + E E G G G + G+G G R R CE
Sbjct: 15 CSALMSTGMRWSASAMLSEGGGGEGGSEGDGGEGGGGGGDVERGDGGGGRWRAGGRGCER 74
Query: 714 R 716
R
Sbjct: 75 R 75
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,408,692
Number of Sequences: 37544
Number of extensions: 529669
Number of successful extensions: 1761
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1754
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3782886900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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