Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_P01
(1230 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y12543-1|CAA73142.1| 897|Caenorhabditis elegans VPS34 homologue... 65 8e-11
U97190-6|AAV58893.1| 716|Caenorhabditis elegans Related to yeas... 65 8e-11
U97190-5|AAV34807.1| 897|Caenorhabditis elegans Related to yeas... 65 8e-11
U97190-4|AAV58894.1| 720|Caenorhabditis elegans Related to yeas... 65 8e-11
U97190-3|AAF23184.1| 901|Caenorhabditis elegans Related to yeas... 65 8e-11
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ... 30 2.9
>Y12543-1|CAA73142.1| 897|Caenorhabditis elegans VPS34 homologue
protein.
Length = 897
Score = 65.3 bits (152), Expect = 8e-11
Identities = 56/214 (26%), Positives = 95/214 (44%), Gaps = 16/214 (7%)
Frame = +1
Query: 208 DKFYYVYSSSLDYKVEIKIGTLEGKRTKPEYDKLLSDPMLKFSGLYQDGCSDLYVTCQIL 387
+ F +VYS L V++K+ EG + +L+ P+ + + L+ +++ V C
Sbjct: 7 ESFSFVYSCDLQTNVQVKVAEFEGI-----FRDVLN-PVRRLNQLF----AEITVYCNNQ 56
Query: 388 SDGEPLALPVMTTYKAFTTR-----WNWNEWVTLPVYYSDLPRNAILAMTIYDCAGPGKV 552
G P+ T + WNEW+TLP+ YSDL R+A L +TI++ V
Sbjct: 57 QIGYPVCTSFHTPPDSSQLARQKLIQKWNEWLTLPIRYSDLSRDAFLHITIWEHEDDEIV 116
Query: 553 -------MVVGGTTISIFGKHGMLRQGMFDLRV----WPGVEGSEKTPGKAPDRGKEQMQ 699
+V + +S+F K G+L+ G+ D+++ P + K D +++
Sbjct: 117 NNSTFSRRLVAQSKLSMFSKRGILKSGVIDVQMNVSTTPDPFVKQPETWKYSDAWGDEIH 176
Query: 700 RLAKLAKKHRNGHLPKVXWLDRLTXREIXMXNEK 801
L K + G + V WLD R I M K
Sbjct: 177 LLFKQVTRQSRGLVEDVPWLDPFASRRIEMIRAK 210
>U97190-6|AAV58893.1| 716|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 34, isoform d
protein.
Length = 716
Score = 65.3 bits (152), Expect = 8e-11
Identities = 56/214 (26%), Positives = 95/214 (44%), Gaps = 16/214 (7%)
Frame = +1
Query: 208 DKFYYVYSSSLDYKVEIKIGTLEGKRTKPEYDKLLSDPMLKFSGLYQDGCSDLYVTCQIL 387
+ F +VYS L V++K+ EG + +L+ P+ + + L+ +++ V C
Sbjct: 7 ESFSFVYSCDLQTNVQVKVAEFEGI-----FRDVLN-PVRRLNQLF----AEITVYCNNQ 56
Query: 388 SDGEPLALPVMTTYKAFTTR-----WNWNEWVTLPVYYSDLPRNAILAMTIYDCAGPGKV 552
G P+ T + WNEW+TLP+ YSDL R+A L +TI++ V
Sbjct: 57 QIGYPVCTSFHTPPDSSQLARQKLIQKWNEWLTLPIRYSDLSRDAFLHITIWEHEDDEIV 116
Query: 553 -------MVVGGTTISIFGKHGMLRQGMFDLRV----WPGVEGSEKTPGKAPDRGKEQMQ 699
+V + +S+F K G+L+ G+ D+++ P + K D +++
Sbjct: 117 NNSTFSRRLVAQSKLSMFSKRGILKSGVIDVQMNVSTTPDPFVKQPETWKYSDAWGDEID 176
Query: 700 RLAKLAKKHRNGHLPKVXWLDRLTXREIXMXNEK 801
L K + G + V WLD R I M K
Sbjct: 177 LLFKQVTRQSRGLVEDVPWLDPFASRRIEMIRAK 210
>U97190-5|AAV34807.1| 897|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 34, isoform c
protein.
Length = 897
Score = 65.3 bits (152), Expect = 8e-11
Identities = 56/214 (26%), Positives = 95/214 (44%), Gaps = 16/214 (7%)
Frame = +1
Query: 208 DKFYYVYSSSLDYKVEIKIGTLEGKRTKPEYDKLLSDPMLKFSGLYQDGCSDLYVTCQIL 387
+ F +VYS L V++K+ EG + +L+ P+ + + L+ +++ V C
Sbjct: 7 ESFSFVYSCDLQTNVQVKVAEFEGI-----FRDVLN-PVRRLNQLF----AEITVYCNNQ 56
Query: 388 SDGEPLALPVMTTYKAFTTR-----WNWNEWVTLPVYYSDLPRNAILAMTIYDCAGPGKV 552
G P+ T + WNEW+TLP+ YSDL R+A L +TI++ V
Sbjct: 57 QIGYPVCTSFHTPPDSSQLARQKLIQKWNEWLTLPIRYSDLSRDAFLHITIWEHEDDEIV 116
Query: 553 -------MVVGGTTISIFGKHGMLRQGMFDLRV----WPGVEGSEKTPGKAPDRGKEQMQ 699
+V + +S+F K G+L+ G+ D+++ P + K D +++
Sbjct: 117 NNSTFSRRLVAQSKLSMFSKRGILKSGVIDVQMNVSTTPDPFVKQPETWKYSDAWGDEID 176
Query: 700 RLAKLAKKHRNGHLPKVXWLDRLTXREIXMXNEK 801
L K + G + V WLD R I M K
Sbjct: 177 LLFKQVTRQSRGLVEDVPWLDPFASRRIEMIRAK 210
>U97190-4|AAV58894.1| 720|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 34, isoform e
protein.
Length = 720
Score = 65.3 bits (152), Expect = 8e-11
Identities = 56/214 (26%), Positives = 95/214 (44%), Gaps = 16/214 (7%)
Frame = +1
Query: 208 DKFYYVYSSSLDYKVEIKIGTLEGKRTKPEYDKLLSDPMLKFSGLYQDGCSDLYVTCQIL 387
+ F +VYS L V++K+ EG + +L+ P+ + + L+ +++ V C
Sbjct: 11 ESFSFVYSCDLQTNVQVKVAEFEGI-----FRDVLN-PVRRLNQLF----AEITVYCNNQ 60
Query: 388 SDGEPLALPVMTTYKAFTTR-----WNWNEWVTLPVYYSDLPRNAILAMTIYDCAGPGKV 552
G P+ T + WNEW+TLP+ YSDL R+A L +TI++ V
Sbjct: 61 QIGYPVCTSFHTPPDSSQLARQKLIQKWNEWLTLPIRYSDLSRDAFLHITIWEHEDDEIV 120
Query: 553 -------MVVGGTTISIFGKHGMLRQGMFDLRV----WPGVEGSEKTPGKAPDRGKEQMQ 699
+V + +S+F K G+L+ G+ D+++ P + K D +++
Sbjct: 121 NNSTFSRRLVAQSKLSMFSKRGILKSGVIDVQMNVSTTPDPFVKQPETWKYSDAWGDEID 180
Query: 700 RLAKLAKKHRNGHLPKVXWLDRLTXREIXMXNEK 801
L K + G + V WLD R I M K
Sbjct: 181 LLFKQVTRQSRGLVEDVPWLDPFASRRIEMIRAK 214
>U97190-3|AAF23184.1| 901|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 34, isoform a
protein.
Length = 901
Score = 65.3 bits (152), Expect = 8e-11
Identities = 56/214 (26%), Positives = 95/214 (44%), Gaps = 16/214 (7%)
Frame = +1
Query: 208 DKFYYVYSSSLDYKVEIKIGTLEGKRTKPEYDKLLSDPMLKFSGLYQDGCSDLYVTCQIL 387
+ F +VYS L V++K+ EG + +L+ P+ + + L+ +++ V C
Sbjct: 11 ESFSFVYSCDLQTNVQVKVAEFEGI-----FRDVLN-PVRRLNQLF----AEITVYCNNQ 60
Query: 388 SDGEPLALPVMTTYKAFTTR-----WNWNEWVTLPVYYSDLPRNAILAMTIYDCAGPGKV 552
G P+ T + WNEW+TLP+ YSDL R+A L +TI++ V
Sbjct: 61 QIGYPVCTSFHTPPDSSQLARQKLIQKWNEWLTLPIRYSDLSRDAFLHITIWEHEDDEIV 120
Query: 553 -------MVVGGTTISIFGKHGMLRQGMFDLRV----WPGVEGSEKTPGKAPDRGKEQMQ 699
+V + +S+F K G+L+ G+ D+++ P + K D +++
Sbjct: 121 NNSTFSRRLVAQSKLSMFSKRGILKSGVIDVQMNVSTTPDPFVKQPETWKYSDAWGDEID 180
Query: 700 RLAKLAKKHRNGHLPKVXWLDRLTXREIXMXNEK 801
L K + G + V WLD R I M K
Sbjct: 181 LLFKQVTRQSRGLVEDVPWLDPFASRRIEMIRAK 214
>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
protein Y32H12A.8 protein.
Length = 3901
Score = 30.3 bits (65), Expect = 2.9
Identities = 19/42 (45%), Positives = 21/42 (50%)
Frame = -3
Query: 676 PEPSPESSRCPQPRATLADRTSPVSACRASRISIWSCHRPPS 551
P P P SSR P SPVS+C +SR S S RP S
Sbjct: 1415 PSPPPSSSRFSTPPV------SPVSSCPSSRFSSPSATRPQS 1450
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,826,671
Number of Sequences: 27780
Number of extensions: 432030
Number of successful extensions: 1473
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1445
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3401633308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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