Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_O24
         (1215 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   5.3  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    23   6.8  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -3

Query: 1102 PXXXPXPGXXXXXXXXPPPPPP 1037
            P   P PG        PPPPPP
Sbjct: 762  PPPPPPPGVAGAGPPPPPPPPP 783


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
            Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 22.6 bits (46), Expect(2) = 6.8
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 1054 PPPPPPXXN 1028
            PPPPPP  N
Sbjct: 308  PPPPPPPSN 316



 Score = 22.2 bits (45), Expect(2) = 6.8
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = -3

Query: 1090 PXPGXXXXXXXXPPPPPP 1037
            P  G        PPPPPP
Sbjct: 295  PSSGDSANGGLPPPPPPP 312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,169,535
Number of Sequences: 5004
Number of extensions: 53952
Number of successful extensions: 170
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 657420060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)