Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_O24
         (1215 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    27   1.3  
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365...    25   8.2  

>10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,
            1211452-1211878,1212091-1213219,1213623-1213746,
            1214207-1214278,1215480-1215578,1215617-1215640,
            1215704-1215745,1215815-1215895,1215983-1216114,
            1216115-1216196,1216271-1216365,1218499-1218570,
            1218676-1218792,1219379-1219447,1219521-1219587,
            1219886-1220025
          Length = 1269

 Score = 27.5 bits (58), Expect(2) = 1.3
 Identities = 13/46 (28%), Positives = 13/46 (28%)
 Frame = -3

Query: 1174 PPXGXXPXPXXXXXXXXXXXXXXXPXXXPXPGXXXXXXXXPPPPPP 1037
            PP    P P               P   P P         PPPPPP
Sbjct: 565  PPPPPPPPPPLPQSNYASSQPPPPPPPPPLPNCLVPSPPPPPPPPP 610



 Score = 22.6 bits (46), Expect(2) = 1.3
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 1054 PPPPPPXXN 1028
            PPPPPP  N
Sbjct: 621  PPPPPPLPN 629


>05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,
            36507-36577,36850-37263,37518-38268
          Length = 601

 Score = 24.6 bits (51), Expect(2) = 8.2
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = -3

Query: 1102 PXXXPXPGXXXXXXXXPPPPPP 1037
            P   P P         PPPPPP
Sbjct: 61   PASPPLPSATPPLAASPPPPPP 82



 Score = 22.6 bits (46), Expect(2) = 8.2
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 1054 PPPPPPXXN 1028
            PPPPPP  N
Sbjct: 80   PPPPPPPRN 88


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,790,384
Number of Sequences: 37544
Number of extensions: 385582
Number of successful extensions: 3119
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2867
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3724688640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)