Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_O24
         (1215 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036690-1|AAB88323.1|  151|Caenorhabditis elegans Hypothetical ...    30   3.8  
AF106574-2|AAM81088.1|  315|Caenorhabditis elegans Hypothetical ...    29   8.8  
AF106574-1|AAY44015.1|  317|Caenorhabditis elegans Hypothetical ...    29   8.8  

>AF036690-1|AAB88323.1|  151|Caenorhabditis elegans Hypothetical
           protein F09C11.1 protein.
          Length = 151

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = -1

Query: 549 KIILSDKNLYHNENTIQIKKLLKT*SDF--FYNINNKRFKLCKMWSTFRY 406
           K  LS +N  +NEN  + +  LKT + F  F NI  K+F +C + + F+Y
Sbjct: 67  KTRLSSENTKNNENLEKKQFFLKTENQFFCFLNIVFKKFTICSV-NNFQY 115


>AF106574-2|AAM81088.1|  315|Caenorhabditis elegans Hypothetical
           protein E02D9.1b protein.
          Length = 315

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = -2

Query: 104 GNLSXRRGHRVVRDGLRFGRGHXGAKGXPVGAR 6
           G    R G    R G R GRG  G  G P+G R
Sbjct: 262 GGRGGRGGRGGFRGGFRGGRGGFGGPGGPMGGR 294


>AF106574-1|AAY44015.1|  317|Caenorhabditis elegans Hypothetical
           protein E02D9.1c protein.
          Length = 317

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = -2

Query: 104 GNLSXRRGHRVVRDGLRFGRGHXGAKGXPVGAR 6
           G    R G    R G R GRG  G  G P+G R
Sbjct: 262 GGRGGRGGRGGFRGGFRGGRGGFGGPGGPMGGR 294


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,251,328
Number of Sequences: 27780
Number of extensions: 329561
Number of successful extensions: 1472
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1316
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3349461018
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)