Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_O24
         (1215 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   4.1  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              23   7.1  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              23   7.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   7.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   9.4  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 780 IHVLKYAGSESRFYLIFVKKNKRTKTVKEIVK 685
           I+V+KY G + +F     KK K+T   K+I K
Sbjct: 104 INVVKYLGGKHKF---ISKKIKKTMENKDITK 132


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -2

Query: 428 KCGPLSDINT*IQIISMSIQFYQHSQSSYILS 333
           +C P+SD N  I+I  +   F+++   + IL+
Sbjct: 103 ECSPISDPNALIKISKILECFFKYKTINQILN 134


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 431 VKCGPLSDINT*IQIISMSIQFYQHSQSSYILS 333
           V+C P+SD N  I+I  +   F ++   + IL+
Sbjct: 102 VECSPISDANVHIKISKIFQCFMKYKTITDILN 134


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -2

Query: 50   GRGHXGAKGXPVG 12
            G GH G  G PVG
Sbjct: 1752 GNGHSGTMGPPVG 1764


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 9   RPYRASFRSXMAPAKSQAVSHXP 77
           RP RA   +   P+KS  ++H P
Sbjct: 584 RPQRACSTTGGVPSKSPTLTHSP 606


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,396
Number of Sequences: 438
Number of extensions: 5105
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 41572845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)