Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_O23
         (1261 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   5.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   5.6  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   7.4  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 662 VIHSLRRPSKLLVGSLFSFTLLRVIDAYS 748
           V+H++RR + +L  S+     + +ID YS
Sbjct: 440 VLHAIRRGASILRVSMPKIKDVNIIDKYS 468


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 338 AESTTGSETRPTEKIRRETQ 397
           A  TTG+ T PT ++R+  Q
Sbjct: 252 AAMTTGTTTIPTRRLRKRRQ 271


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 523 NVFRAGVTHYTFRLISMGKMKNRYRSIEIWMTDFIRELGLSFQ 651
           +V R     Y+ +LISM  +K    SIE   T++  E GL F+
Sbjct: 623 HVLRGNENIYSGKLISMRHLKEEVSSIE---TNY--ECGLRFE 660


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 254,538
Number of Sequences: 438
Number of extensions: 5911
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 43102617
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)