Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_O22
         (1298 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    31   0.35 
SPAC6B12.14c |||conserved fungal protein|Schizosaccharomyces pom...    30   0.80 

>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 31.1 bits (67), Expect = 0.35
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +2

Query: 239 FTLV--KXADRXKSLVIYFSTNVLLTXYCWQVYXSIIQANV 355
           FT++  K A   K  VI+F T VLLT +CW V   +I  +V
Sbjct: 74  FTILCRKLASTLKQRVIFF-TRVLLTFFCWTVLLPLIFKHV 113


>SPAC6B12.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 29.9 bits (64), Expect = 0.80
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = +2

Query: 110 NLMPXKSSALSMXXXSKHRXVAAHLKSNALSITKLNVASTNQLFTLVK 253
           N  P +S+ LS    S +  V +H K  ALS+T+L  AST ++    K
Sbjct: 6   NFSPSQSNDLSTS--SGYENVLSHFKQAALSVTQLYQASTTEVLKAQK 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,669,034
Number of Sequences: 5004
Number of extensions: 27614
Number of successful extensions: 64
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 709422546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)