Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_O21
         (1290 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    27   4.3  
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    27   7.4  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   9.8  
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M...    26   9.8  

>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
 Frame = -3

Query: 493 RSSRTDCRRPHQ---RRPLREEYHSCR 422
           R+SR+D RRPH    RRP  +EY   R
Sbjct: 244 RNSRSDYRRPHDDEYRRPRGDEYRPGR 270


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 18/65 (27%), Positives = 32/65 (49%)
 Frame = +1

Query: 250 GDNDLSDEMSSTLNDVVVRSKLSNESNFLAVNLKSGSTNYTHFAQIYQIVPVPSLFFIGR 429
           G++++ D M+++  D V R K       L+ +LKS    Y H   +Y+ V +    +I R
Sbjct: 351 GESNVDDGMAASRYDTVKREK-----ERLSEHLKSLQEQYEHIQSVYKNVLLDRESYIMR 405

Query: 430 NGTPL 444
            G  +
Sbjct: 406 LGNKI 410


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 14/40 (35%), Positives = 15/40 (37%)
 Frame = +3

Query: 966  KKLEXXXXPGTDPAXNTPGPAXRXXRXPAPXPXNPXPXPP 1085
            +KL     P   PA   P PA      P P P    P PP
Sbjct: 725  QKLLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPP 764


>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 23/102 (22%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
 Frame = +1

Query: 190 IAEAVNLSKQRNTIFVVFIQGDNDLSDEMSST--LNDVVVRSKLSNESNFLAVNLKSGST 363
           I  ++NL   +  +++V +  D+ LSDE  +   + + V ++   ++   L+V  +    
Sbjct: 231 ILNSLNLLTAKPVVYLVNMDQDDYLSDEQEALKGIKEWVEKNSFGDQVIPLSVLFEE--- 287

Query: 364 NYTHFAQIYQIVP---VPSLFFIGRNGTPLEVVCAGVDADNL 480
                 Q++ + P         +G+N    E++CAG  A NL
Sbjct: 288 ------QLFMLTPEEAAQECASLGKNSQLSEIICAGYSALNL 323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,562,345
Number of Sequences: 5004
Number of extensions: 66304
Number of successful extensions: 220
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 703461012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)