Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_O20
         (1292 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   0.66 
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    26   9.8  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.0 bits (52), Expect(2) = 0.66
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -3

Query: 864 PPPPPPGXXG 835
           PPPPPPG  G
Sbjct: 763 PPPPPPGVAG 772



 Score = 23.4 bits (48), Expect(2) = 0.66
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 879 LXXKXPPPPPP 847
           L  K PPPPPP
Sbjct: 727 LLLKSPPPPPP 737


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 14/37 (37%), Positives = 14/37 (37%)
 Frame = -1

Query: 329 FXXKXLFFXPFFFXXXPPPXXFFFFXGPXPPPXXGAP 219
           F    LF     F   PPP  F    G  P P  GAP
Sbjct: 126 FCRTILFSLLTSFLLVPPPQFFHSEAGERPTPSVGAP 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.147    0.473 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,091,010
Number of Sequences: 5004
Number of extensions: 25437
Number of successful extensions: 71
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 705448190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)